Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions

por Davis, Margaret R., Andersson, Robin, Severin, Jessica, de Hoon, Michiel, Bertin, Nicolas, Baillie, J. Kenneth, Kawaji, Hideya, Sandelin, Albin, Forrest, Alistair R.R., Summers, Kim M.
Publicado 2014

A draft network of ligand–receptor-mediated multicellular signalling in human

por Ramilowski, Jordan A., Goldberg, Tatyana, Harshbarger, Jayson, Kloppman, Edda, Lizio, Marina, Satagopam, Venkata P., Itoh, Masayoshi, Kawaji, Hideya, Carninci, Piero, Rost, Burkhard, Forrest, Alistair R. R.
Publicado 2015

Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human

por Ramilowski, Jordan A., Goldberg, Tatyana, Harshbarger, Jayson, Kloppmann, Edda, Lizio, Marina, Satagopam, Venkata P., Itoh, Masayoshi, Kawaji, Hideya, Carninci, Piero, Rost, Burkhard, Forrest, Alistair R. R.
Publicado 2016

Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli

por Vacca, Annalaura, Itoh, Masayoshi, Kawaji, Hideya, Arner, Erik, Lassmann, Timo, Daub, Carsten O., Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Aitken, Stuart, Semple, Colin A.
Publicado 2018

Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

por Denisenko, Elena, Guo, Belinda B., Jones, Matthew, Hou, Rui, de Kock, Leanne, Lassmann, Timo, Poppe, Daniel, Clément, Olivier, Simmons, Rebecca K., Lister, Ryan, Forrest, Alistair R. R.
Publicado 2020

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

por Kawaji, Hideya, Severin, Jessica, Lizio, Marina, Forrest, Alistair R. R., van Nimwegen, Erik, Rehli, Michael, Schroder, Kate, Irvine, Katharine, Suzuki, Harukazu, Carninci, Piero, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado 2011

LRRN4 and UPK3B Are Markers of Primary Mesothelial Cells

por Kanamori-Katayama, Mutsumi, Kaiho, Ai, Ishizu, Yuri, Okamura-Oho, Yuko, Hino, Okio, Abe, Masaaki, Kishimoto, Takumi, Sekihara, Hisahiko, Nakamura, Yukio, Suzuki, Harukazu, Forrest, Alistair R. R., Hayashizaki, Yoshihide
Publicado 2011

Automated Workflow for Preparation of cDNA for Cap Analysis of Gene Expression on a Single Molecule Sequencer

por Itoh, Masayoshi, Kojima, Miki, Nagao-Sato, Sayaka, Saijo, Eri, Lassmann, Timo, Kanamori-Katayama, Mutsumi, Kaiho, Ai, Lizio, Marina, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide
Publicado 2012

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

por Yu, Nancy Yiu-Lin, Hallström, Björn M., Fagerberg, Linn, Ponten, Fredrik, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair R. R., FANTOM Consortium, The, Hayashizaki, Yoshihide, Uhlén, Mathias, Daub, Carsten O.
Publicado 2015

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

por Lizio, Marina, Ishizu, Yuri, Itoh, Masayoshi, Lassmann, Timo, Hasegawa, Akira, Kubosaki, Atsutaka, Severin, Jessica, Kawaji, Hideya, Nakamura, Yukio, Suzuki, Harukazu, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R.
Publicado 2015

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

por Carbajo, Daniel, Magi, Shigeyuki, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Arner, Erik, Forrest, Alistair R. R., Carninci, Piero, Hayashizaki, Yoshihide, Daub, Carsten O., Okada-Hatakeyama, Mariko, Mar, Jessica C.
Publicado 2015

Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells

por Mina, Marco, Magi, Shigeyuki, Jurman, Giuseppe, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Arner, Erik, Forrest, Alistair R. R., Carninci, Piero, Hayashizaki, Yoshihide, Daub, Carsten O., Okada-Hatakeyama, Mariko, Furlanello, Cesare
Publicado 2015

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

por Bertin, Nicolas, Mendez, Mickaël, Hasegawa, Akira, Lizio, Marina, Abugessaisa, Imad, Severin, Jessica, Sakai-Ohno, Mizuho, Lassmann, Timo, Kasukawa, Takeya, Kawaji, Hideya, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Carninci, Piero, Plessy, Charles
Publicado 2017

Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis

por Horie, Masafumi, Yamaguchi, Yoko, Saito, Akira, Nagase, Takahide, Lizio, Marina, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Suzutani, Tatsuo, Kappert, Kai, Micke, Patrick, Ohshima, Mitsuhiro
Publicado 2016

Correction to: Relatively frequent switching of transcription start sites during cerebellar development

por Zhang, Peter, Dimont, Emmanuel, Ha, Thomas, Swanson, Douglas J., Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Daub, Carsten O., Arner, Erik, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Hide, Winston, Goldowitz, Dan
Publicado 2018

Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases

por Zucchelli, Silvia, Fedele, Stefania, Vatta, Paolo, Calligaris, Raffaella, Heutink, Peter, Rizzu, Patrizia, Itoh, Masayoshi, Persichetti, Francesca, Santoro, Claudio, Kawaji, Hideya, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R., Gustincich, Stefano
Publicado 2019

Comprehensive Characterization of Transcriptional Activity during Influenza A Virus Infection Reveals Biases in Cap-Snatching of Host RNA Sequences

por Clohisey, Sara, Parkinson, Nicholas, Wang, Bo, Bertin, Nicolas, Wise, Helen, Tomoiu, Andru, Summers, Kim M., Hendry, Ross W., Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Digard, Paul, Hume, David A., Baillie, J. Kenneth
Publicado 2020

Systematic analysis of transcription start sites in avian development

por Lizio, Marina, Deviatiiarov, Ruslan, Nagai, Hiroki, Galan, Laura, Arner, Erik, Itoh, Masayoshi, Lassmann, Timo, Kasukawa, Takeya, Hasegawa, Akira, Ros, Marian A., Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R., Kawaji, Hideya, Gusev, Oleg, Sheng, Guojun
Publicado 2017

Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response

por Aitken, Stuart, Magi, Shigeyuki, Alhendi, Ahmad M. N., Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Daub, Carsten O., Arner, Erik, Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Khachigian, Levon M., Okada-Hatakeyama, Mariko, Semple, Colin A.
Publicado 2015

Monitoring transcription initiation activities in rat and dog

por Lizio, Marina, Mukarram, Abdul Kadir, Ohno, Mizuho, Watanabe, Shoko, Itoh, Masayoshi, Hasegawa, Akira, Lassmann, Timo, Severin, Jessica, Harshbarger, Jayson, Abugessaisa, Imad, Kasukawa, Takeya, Hon, Chung Chau, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R.R., Kawaji, Hideya
Publicado 2017