Gene-Network Analysis Identifies Susceptibility Genes Related to Glycobiology in Autism

por van der Zwaag, Bert, Franke, Lude, Poot, Martin, Hochstenbach, Ron, Spierenburg, Henk A., Vorstman, Jacob A. S., van Daalen, Emma, de Jonge, Maretha V., Verbeek, Nienke E., Brilstra, Eva H., van 't Slot, Ruben, Ophoff, Roel A., van Es, Michael A., Blauw, Hylke M., Veldink, Jan H., Buizer-Voskamp, Jacobine E., Beemer, Frits A., van den Berg, Leonard H., Wijmenga, Cisca, van Amstel, Hans Kristian Ploos, van Engeland, Herman, Burbach, J. Peter H., Staal, Wouter G.
Publicado 2009

Deconvolution of bulk blood eQTL effects into immune cell subpopulations

por Aguirre-Gamboa, Raúl, de Klein, Niek, di Tommaso, Jennifer, Claringbould, Annique, van der Wijst, Monique GP, de Vries, Dylan, Brugge, Harm, Oelen, Roy, Võsa, Urmo, Zorro, Maria M., Chu, Xiaojin, Bakker, Olivier B., Borek, Zuzanna, Ricaño-Ponce, Isis, Deelen, Patrick, Xu, Cheng-Jiang, Swertz, Morris, Jonkers, Iris, Withoff, Sebo, Joosten, Irma, Sanna, Serena, Kumar, Vinod, Koenen, Hans J. P. M., Joosten, Leo A. B., Netea, Mihai G., Wijmenga, Cisca, Franke, Lude, Li, Yang
Publicado 2020

Autosomal genetic variation is associated with DNA methylation in regions variably escaping X-chromosome inactivation

por Luijk, René, Wu, Haoyu, Ward-Caviness, Cavin K, Hannon, Eilis, Carnero-Montoro, Elena, Min, Josine L., Mandaviya, Pooja, Müller-Nurasyid, Martina, Mei, Hailiang, van der Maarel, Silvere M., Relton, Caroline, Mill, Jonathan, Waldenberger, Melanie, Bell, Jordana T., Jansen, Rick, Zhernakova, Alexandra, Franke, Lude, ‘t Hoen, Peter A. C., Boomsma, Dorret I., van Duijn, Cornelia M., van Greevenbroek, Marleen M. J., Veldink, Jan H., Wijmenga, Cisca, van Meurs, Joyce, Daxinger, Lucia, Slagboom, P. Eline, van Zwet, Erik W., Heijmans, Bastiaan T.
Publicado 2018

Trans-eQTLs Reveal That Independent Genetic Variants Associated with a Complex Phenotype Converge on Intermediate Genes, with a Major Role for the HLA

por Fehrmann, Rudolf S. N., Jansen, Ritsert C., Veldink, Jan H., Westra, Harm-Jan, Arends, Danny, Bonder, Marc Jan, Fu, Jingyuan, Deelen, Patrick, Groen, Harry J. M., Smolonska, Asia, Weersma, Rinse K., Hofstra, Robert M. W., Buurman, Wim A., Rensen, Sander, Wolfs, Marcel G. M., Platteel, Mathieu, Zhernakova, Alexandra, Elbers, Clara C., Festen, Eleanora M., Trynka, Gosia, Hofker, Marten H., Saris, Christiaan G. J., Ophoff, Roel A., van den Berg, Leonard H., van Heel, David A., Wijmenga, Cisca, te Meerman, Gerard J., Franke, Lude
Publicado 2011

Mapping of Gene Expression Reveals CYP27A1 as a Susceptibility Gene for Sporadic ALS

por Diekstra, Frank P., Saris, Christiaan G. J., van Rheenen, Wouter, Franke, Lude, Jansen, Ritsert C., van Es, Michael A., van Vught, Paul W. J., Blauw, Hylke M., Groen, Ewout J. N., Horvath, Steve, Estrada, Karol, Rivadeneira, Fernando, Hofman, Albert, Uitterlinden, Andre G., Robberecht, Wim, Andersen, Peter M., Melki, Judith, Meininger, Vincent, Hardiman, Orla, Landers, John E., Brown, Robert H., Shatunov, Aleksey, Shaw, Christopher E., Leigh, P. Nigel, Al-Chalabi, Ammar, Ophoff, Roel A., van den Berg, Leonard H., Veldink, Jan H.
Publicado 2012

Lifelines COVID-19 cohort: investigating COVID-19 infection and its health and societal impacts in a Dutch population-based cohort

por Mc Intyre, Katherine, Lanting, Pauline, Deelen, Patrick, Wiersma, Henry H, Vonk, Judith M, Ori, Anil P S, Jankipersadsing, Soesma A, Warmerdam, Robert, van Blokland, Irene, Boulogne, Floranne, Dijkema, Marjolein X L, Herkert, Johanna C, Claringbould, Annique, Bakker, Olivier, Lopera Maya, Esteban A, Bültmann, Ute, Zhernakova, Alexandra, Reijneveld, Sijmen A, Zijlstra, Elianne, Swertz, Morris A, Brouwer, Sandra, van Ooijen, Raun, Angelini, Viola, Dekker, Louise H, Sijtsma, Anna, Scherjon, Sicco A, Wijmenga, Cisca, Dekens, Jackie A M, Mierau, Jochen, Boezen, H Marike, Franke, Lude
Publicado 2021

Twenty-eight genetic loci associated with ST-T-wave amplitudes of the electrocardiogram

por Verweij, Niek, Mateo Leach, Irene, Isaacs, Aaron, Arking, Dan E., Bis, Joshua C., Pers, Tune H., Van Den Berg, Marten E., Lyytikäinen, Leo-Pekka, Barnett, Phil, Wang, Xinchen, Soliman, Elsayed Z., Van Duijn, Cornelia M., Kähönen, Mika, Van Veldhuisen, Dirk J., Kors, Jan A., Raitakari, Olli T., Silva, Claudia T., Lehtimäki, Terho, Hillege, Hans L., Hirschhorn, Joel N., Boyer, Laurie A., Van Gilst, Wiek H., Alonso, Alvaro, Sotoodehnia, Nona, Eijgelsheim, Mark, De Boer, Rudolf A., De Bakker, Paul I. W., Franke, Lude, Van Der Harst, Pim
Publicado 2016

Improving the diagnostic yield of exome- sequencing by predicting gene–phenotype associations using large-scale gene expression analysis

por Deelen, Patrick, van Dam, Sipko, Herkert, Johanna C., Karjalainen, Juha M., Brugge, Harm, Abbott, Kristin M., van Diemen, Cleo C., van der Zwaag, Paul A., Gerkes, Erica H., Zonneveld-Huijssoon, Evelien, Boer-Bergsma, Jelkje J., Folkertsma, Pytrik, Gillett, Tessa, van der Velde, K. Joeri, Kanninga, Roan, van den Akker, Peter C., Jan, Sabrina Z., Hoorntje, Edgar T., te Rijdt, Wouter P., Vos, Yvonne J., Jongbloed, Jan D. H., van Ravenswaaij-Arts, Conny M. A., Sinke, Richard, Sikkema-Raddatz, Birgit, Kerstjens-Frederikse, Wilhelmina S., Swertz, Morris A., Franke, Lude
Publicado 2019

Integration of metabolomics, genomics, and immune phenotypes reveals the causal roles of metabolites in disease

por Chu, Xiaojing, Jaeger, Martin, Beumer, Joep, Bakker, Olivier B., Aguirre-Gamboa, Raul, Oosting, Marije, Smeekens, Sanne P., Moorlag, Simone, Mourits, Vera P., Koeken, Valerie A. C. M., de Bree, Charlotte, Jansen, Trees, Mathews, Ian T., Dao, Khoi, Najhawan, Mahan, Watrous, Jeramie D., Joosten, Irma, Sharma, Sonia, Koenen, Hans J. P. M., Withoff, Sebo, Jonkers, Iris H., Netea-Maier, Romana T., Xavier, Ramnik J., Franke, Lude, Xu, Cheng-Jian, Joosten, Leo A. B., Sanna, Serena, Jain, Mohit, Kumar, Vinod, Clevers, Hans, Wijmenga, Cisca, Netea, Mihai G., Li, Yang
Publicado 2021

Using symptom-based case predictions to identify host genetic factors that contribute to COVID-19 susceptibility

por van Blokland, Irene V., Lanting, Pauline, Ori, Anil P. S., Vonk, Judith M., Warmerdam, Robert C. A., Herkert, Johanna C., Boulogne, Floranne, Claringbould, Annique, Lopera-Maya, Esteban A., Bartels, Meike, Hottenga, Jouke-Jan, Ganna, Andrea, Karjalainen, Juha, Hayward, Caroline, Fawns-Ritchie, Chloe, Campbell, Archie, Porteous, David, Cirulli, Elizabeth T., Schiabor Barrett, Kelly M., Riffle, Stephen, Bolze, Alexandre, White, Simon, Tanudjaja, Francisco, Wang, Xueqing, Ramirez, Jimmy M., Lim, Yan Wei, Lu, James T., Washington, Nicole L., de Geus, Eco J. C., Deelen, Patrick, Boezen, H. Marike, Franke, Lude H.
Publicado 2021

Meta-Analysis of Genome-Wide Association Studies in Celiac Disease and Rheumatoid Arthritis Identifies Fourteen Non-HLA Shared Loci

por Zhernakova, Alexandra, Stahl, Eli A., Trynka, Gosia, Raychaudhuri, Soumya, Festen, Eleanora A., Franke, Lude, Westra, Harm-Jan, Fehrmann, Rudolf S. N., Kurreeman, Fina A. S., Thomson, Brian, Gupta, Namrata, Romanos, Jihane, McManus, Ross, Ryan, Anthony W., Turner, Graham, Brouwer, Elisabeth, Posthumus, Marcel D., Remmers, Elaine F., Tucci, Francesca, Toes, Rene, Grandone, Elvira, Mazzilli, Maria Cristina, Rybak, Anna, Cukrowska, Bozena, Coenen, Marieke J. H., Radstake, Timothy R. D. J., van Riel, Piet L. C. M., Li, Yonghong, de Bakker, Paul I. W., Gregersen, Peter K., Worthington, Jane, Siminovitch, Katherine A., Klareskog, Lars, Huizinga, Tom W. J., Wijmenga, Cisca, Plenge, Robert M.
Publicado 2011

Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

por Slieker, Roderick C., van Iterson, Maarten, Luijk, René, Beekman, Marian, Zhernakova, Daria V., Moed, Matthijs H., Mei, Hailiang, van Galen, Michiel, Deelen, Patrick, Bonder, Marc Jan, Zhernakova, Alexandra, Uitterlinden, André G., Tigchelaar, Ettje F., Stehouwer, Coen D. A., Schalkwijk, Casper G., van der Kallen, Carla J. H., Hofman, Albert, van Heemst, Diana, de Geus, Eco J., van Dongen, Jenny, Deelen, Joris, van den Berg, Leonard H., van Meurs, Joyce, Jansen, Rick, ‘t Hoen, Peter A. C., Franke, Lude, Wijmenga, Cisca, Veldink, Jan H., Swertz, Morris A., van Greevenbroek, Marleen M. J., van Duijn, Cornelia M., Boomsma, Dorret I., Slagboom, P. Eline, Heijmans, Bastiaan T.
Publicado 2016

Genetically defined elevated homocysteine levels do not result in widespread changes of DNA methylation in leukocytes

por Mandaviya, Pooja R., Joehanes, Roby, Aïssi, Dylan, Kühnel, Brigitte, Marioni, Riccardo E., Truong, Vinh, Stolk, Lisette, Beekman, Marian, Bonder, Marc Jan, Franke, Lude, Gieger, Christian, Huan, Tianxiao, Ikram, M. Arfan, Kunze, Sonja, Liang, Liming, Lindemans, Jan, Liu, Chunyu, McRae, Allan F., Mendelson, Michael M., Müller-Nurasyid, Martina, Peters, Annette, Slagboom, P. Eline, Starr, John M., Trégouët, David-Alexandre, Uitterlinden, André G., van Greevenbroek, Marleen M. J., van Heemst, Diana, van Iterson, Maarten, Wells, Philip S., Yao, Chen, Deary, Ian J., Gagnon, France, Heijmans, Bastiaan T., Levy, Daniel, Morange, Pierre-Emmanuel, Waldenberger, Melanie, Heil, Sandra G., van Meurs, Joyce B. J.
Publicado 2017

Genetic regulation of fetal hemoglobin across global populations

por Cato, Liam D., Li, Rick, Lu, Henry Y., Yu, Fulong, Wissman, Mariel, Mkumbe, Baraka S., Ekwattanakit, Supachai, Deelen, Patrick, Mwita, Liberata, Sangeda, Raphael, Suksangpleng, Thidarat, Riolueang, Suchada, Bronson, Paola G., Paul, Dirk S., Kawabata, Emily, Astle, William J., Aguet, Francois, Ardlie, Kristin, de Lapuente Portilla, Aitzkoa Lopez, Kang, Guolian, Zhang, Yingze, Nouraie, Seyed Mehdi, Gordeuk, Victor R., Gladwin, Mark T., Garrett, Melanie E., Ashley-Koch, Allison, Telen, Marilyn J., Custer, Brian, Kelly, Shannon, Dinardo, Carla Luana, Sabino, Ester C., Loureiro, Paula, Carneiro-Proietti, Anna Bárbara, Maximo, Cláudia, Méndez, Adriana, Hammerer-Lercher, Angelika, Sheehan, Vivien A., Weiss, Mitchell J., Franke, Lude, Nilsson, Björn, Butterworth, Adam S., Viprakasit, Vip, Nkya, Siana, Sankaran, Vijay G.
Publicado 2023

High density genetic mapping identifies new susceptibility loci for rheumatoid arthritis

por Eyre, Steve, Bowes, John, Diogo, Dorothée, Lee, Annette, Barton, Anne, Martin, Paul, Zhernakova, Alexandra, Stahl, Eli, Viatte, Sebastien, McAllister, Kate, Amos, Christopher I., Padyukov, Leonid, Toes, Rene E.M., Huizinga, Tom W.J., Wijmenga, Cisca, Trynka, Gosia, Franke, Lude, Westra, Harm-Jan, Alfredsson, Lars, Hu, Xinli, Sandor, Cynthia, de Bakker, Paul I.W., Davila, Sonia, Khor, Chiea Chuen, Heng, Khai Koon, Andrews, Robert, Edkins, Sarah, Hunt, Sarah E, Langford, Cordelia, Symmons, Deborah, Concannon, Pat, Onengut-Gumuscu, Suna, Rich, Stephen S, Deloukas, Panos, Gonzalez-Gay, Miguel A., Rodriguez-Rodriguez, Luis, Ärlsetig, Lisbeth, Martin, Javier, Rantapää-Dahlqvist, Solbritt, Plenge, Robert, Raychaudhuri, Soumya, Klareskog, Lars, Gregersen, Peter K, Worthington, Jane
Publicado 2012

Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci

por Ellinghaus, David, Jostins, Luke, Spain, Sarah L, Cortes, Adrian, Bethune, Jörn, Han, Buhm, Park, Yu Rang, Raychaudhuri, Soumya, Pouget, Jennie G, Hübenthal, Matthias, Folseraas, Trine, Wang, Yunpeng, Esko, Tonu, Metspalu, Andres, Westra, Harm-Jan, Franke, Lude, Pers, Tune H, Weersma, Rinse K, Collij, Valerie, D'Amato, Mauro, Halfvarson, Jonas, Jensen, Anders Boeck, Lieb, Wolfgang, Degenhardt, Franziska, Forstner, Andreas J, Hofmann, Andrea, Schreiber, Stefan, Mrowietz, Ulrich, Juran, Brian D, Lazaridis, Konstantinos N, Brunak, Søren, Dale, Anders M, Trembath, Richard C, Weidinger, Stephan, Weichenthal, Michael, Ellinghaus, Eva, Elder, James T, Barker, Jonathan NWN, Andreassen, Ole A, McGovern, Dermot P, Karlsen, Tom H, Barrett, Jeffrey C, Parkes, Miles, Brown, Matthew A, Franke, Andre
Publicado 2016

Blood lipids influence DNA methylation in circulating cells

por Dekkers, Koen F., van Iterson, Maarten, Slieker, Roderick C., Moed, Matthijs H., Bonder, Marc Jan, van Galen, Michiel, Mei, Hailiang, Zhernakova, Daria V., van den Berg, Leonard H., Deelen, Joris, van Dongen, Jenny, van Heemst, Diana, Hofman, Albert, Hottenga, Jouke J., van der Kallen, Carla J. H., Schalkwijk, Casper G., Stehouwer, Coen D. A., Tigchelaar, Ettje F., Uitterlinden, André G., Willemsen, Gonneke, Zhernakova, Alexandra, Franke, Lude, ’t Hoen, Peter A. C., Jansen, Rick, van Meurs, Joyce, Boomsma, Dorret I., van Duijn, Cornelia M., van Greevenbroek, Marleen M. J., Veldink, Jan H., Wijmenga, Cisca, van Zwet, Erik W., Slagboom, P. Eline, Jukema, J. Wouter, Heijmans, Bastiaan T.
Publicado 2016

Large-scale plasma metabolome analysis reveals alterations in HDL metabolism in migraine

por Onderwater, Gerrit L.J., Ligthart, Lannie, Bot, Mariska, Demirkan, Ayse, Fu, Jingyuan, van der Kallen, Carla J.H., Vijfhuizen, Lisanne S., Pool, René, Liu, Jun, Vanmolkot, Floris H.M., Beekman, Marian, Wen, Ke-xin, Amin, Najaf, Thesing, Carisha S., Pijpers, Judith A., Kies, Dennis A., Zielman, Ronald, de Boer, Irene, van Greevenbroek, Marleen M.J., Arts, Ilja C.W., Milaneschi, Yuri, Schram, Miranda T., Dagnelie, Pieter C., Franke, Lude, Ikram, M. Arfan, Ferrari, Michel D., Goeman, Jelle J., Slagboom, P. Eline, Wijmenga, Cisca, Stehouwer, Coen D.A., Boomsma, Dorret I., van Duijn, Cornelia M., Penninx, Brenda W., 't Hoen, Peter A.C., Terwindt, Gisela M., van den Maagdenberg, Arn M.J.M.
Publicado 2019

Overlapping SETBP1 gain-of-function mutations in Schinzel-Giedion syndrome and hematologic malignancies

por Acuna-Hidalgo, Rocio, Deriziotis, Pelagia, Steehouwer, Marloes, Gilissen, Christian, Graham, Sarah A., van Dam, Sipko, Hoover-Fong, Julie, Telegrafi, Aida B., Destree, Anne, Smigiel, Robert, Lambie, Lindsday A., Kayserili, Hülya, Altunoglu, Umut, Lapi, Elisabetta, Uzielli, Maria Luisa, Aracena, Mariana, Nur, Banu G., Mihci, Ercan, Moreira, Lilia M. A., Borges Ferreira, Viviane, Horovitz, Dafne D. G., da Rocha, Katia M., Jezela-Stanek, Aleksandra, Brooks, Alice S., Reutter, Heiko, Cohen, Julie S., Fatemi, Ali, Smitka, Martin, Grebe, Theresa A., Di Donato, Nataliya, Deshpande, Charu, Vandersteen, Anthony, Marques Lourenço, Charles, Dufke, Andreas, Rossier, Eva, Andre, Gwenaelle, Baumer, Alessandra, Spencer, Careni, McGaughran, Julie, Franke, Lude, Veltman, Joris A., De Vries, Bert B. A., Schinzel, Albert, Fisher, Simon E., Hoischen, Alexander, van Bon, Bregje W.
Publicado 2017

Epigenome-wide association meta-analysis of DNA methylation with coffee and tea consumption

por Karabegović, Irma, Portilla-Fernandez, Eliana, Li, Yang, Ma, Jiantao, Maas, Silvana C. E., Sun, Daokun, Hu, Emily A., Kühnel, Brigitte, Zhang, Yan, Ambatipudi, Srikant, Fiorito, Giovanni, Huang, Jian, Castillo-Fernandez, Juan E., Wiggins, Kerri L., de Klein, Niek, Grioni, Sara, Swenson, Brenton R., Polidoro, Silvia, Treur, Jorien L., Cuenin, Cyrille, Tsai, Pei-Chien, Costeira, Ricardo, Chajes, Veronique, Braun, Kim, Verweij, Niek, Kretschmer, Anja, Franke, Lude, van Meurs, Joyce B. J., Uitterlinden, André G., de Knegt, Robert J., Ikram, M. Arfan, Dehghan, Abbas, Peters, Annette, Schöttker, Ben, Gharib, Sina A., Sotoodehnia, Nona, Bell, Jordana T., Elliott, Paul, Vineis, Paolo, Relton, Caroline, Herceg, Zdenko, Brenner, Hermann, Waldenberger, Melanie, Rebholz, Casey M., Voortman, Trudy, Pan, Qiuwei, Fornage, Myriam, Levy, Daniel, Kayser, Manfred, Ghanbari, Mohsen
Publicado 2021