Mycobacterial Lineages Causing Pulmonary and Extrapulmonary Tuberculosis, Ethiopia

por Firdessa, Rebuma, Berg, Stefan, Hailu, Elena, Schelling, Esther, Gumi, Balako, Erenso, Girume, Gadisa, Endalamaw, Kiros, Teklu, Habtamu, Meseret, Hussein, Jemal, Zinsstag, Jakob, Robertson, Brian D., Ameni, Gobena, Lohan, Amanda J., Loftus, Brendan, Comas, Iñaki, Gagneux, Sebastien, Tschopp, Rea, Yamuah, Lawrence, Hewinson, Glyn, Gordon, Stephen V., Young, Douglas B., Aseffa, Abraham
Publicado 2013

Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study

por Zürcher, Kathrin, Reichmuth, Martina L, Ballif, Marie, Loiseau, Chloé, Borrell, Sonia, Reinhard, Miriam, Skrivankova, Veronika, Hömke, Rico, Sander, Peter, Avihingsanon, Anchalee, Abimiku, Alash’le G, Marcy, Olivier, Collantes, Jimena, Carter, E Jane, Wilkinson, Robert J, Cox, Helen, Yotebieng, Marcel, Huebner, Robin, Fenner, Lukas, Böttger, Erik C, Gagneux, Sebastien, Egger, Matthias
Publicado 2021

Macrophage susceptibility to infection by Ghanaian Mycobacterium tuberculosis complex lineages 4 and 5 varies with self-reported ethnicity

por Osei-Wusu, Stephen, Tetteh, John K. A., Musah, Abdul Basit, Ntiamoah, Desmond Opoku, Arthur, Nelly, Adjei, Abraham, Arbues, Ainhoa, Ofori, Ebenezer Addo, Mensah, Kwadwo Akyea, Galevo, Sutaya Elsie Afua, Frempong, Abena Frema, Asare, Prince, Asante-Poku, Adwoa, Otchere, Isaac Darko, Kusi, Kwadwo Asamoah, Lenz, Tobias L., Gagneux, Sebastien, Portevin, Damien, Yeboah-Manu, Dorothy
Publicado 2023

A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region

por Ngabonziza, Jean Claude Semuto, Loiseau, Chloé, Marceau, Michael, Jouet, Agathe, Menardo, Fabrizio, Tzfadia, Oren, Antoine, Rudy, Niyigena, Esdras Belamo, Mulders, Wim, Fissette, Kristina, Diels, Maren, Gaudin, Cyril, Duthoy, Stéphanie, Ssengooba, Willy, André, Emmanuel, Kaswa, Michel K., Habimana, Yves Mucyo, Brites, Daniela, Affolabi, Dissou, Mazarati, Jean Baptiste, de Jong, Bouke Catherine, Rigouts, Leen, Gagneux, Sebastien, Meehan, Conor Joseph, Supply, Philip
Publicado 2020

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

por Ezewudo, Matthew, Borens, Amanda, Chiner-Oms, Álvaro, Miotto, Paolo, Chindelevitch, Leonid, Starks, Angela M., Hanna, Debra, Liwski, Richard, Zignol, Matteo, Gilpin, Christopher, Niemann, Stefan, Kohl, Thomas Andreas, Warren, Robin M., Crook, Derrick, Gagneux, Sebastien, Hoffner, Sven, Rodrigues, Camilla, Comas, Iñaki, Engelthaler, David M., Alland, David, Rigouts, Leen, Lange, Christoph, Dheda, Keertan, Hasan, Rumina, McNerney, Ruth, Cirillo, Daniela M., Schito, Marco, Rodwell, Timothy C., Posey, James
Publicado 2018

Author Correction: Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

por Ezewudo, Matthew, Borens, Amanda, Chiner-Oms, Álvaro, Miotto, Paolo, Chindelevitch, Leonid, Starks, Angela M., Hanna, Debra, Liwski, Richard, Zignol, Matteo, Gilpin, Christopher, Niemann, Stefan, Kohl, Thomas Andreas, Warren, Robin M., Crook, Derrick, Gagneux, Sebastien, Hoffner, Sven, Rodrigues, Camilla, Comas, Iñaki, Engelthaler, David M., Alland, David, Rigouts, Leen, Lange, Christoph, Dheda, Keertan, Hasan, Rumina, McNerney, Ruth, Cirillo, Daniela M., Schito, Marco, Rodwell, Timothy C., Posey, James
Publicado 2020

Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1β production

por Sousa, Jeremy, Cá, Baltazar, Maceiras, Ana Raquel, Simões-Costa, Luisa, Fonseca, Kaori L., Fernandes, Ana Isabel, Ramos, Angélica, Carvalho, Teresa, Barros, Leandro, Magalhães, Carlos, Chiner-Oms, Álvaro, Machado, Henrique, Veiga, Maria Isabel, Singh, Albel, Pereira, Rui, Amorim, António, Vieira, Jorge, Vieira, Cristina P., Bhatt, Apoorva, Rodrigues, Fernando, Rodrigues, Pedro N. S., Gagneux, Sebastien, Castro, António Gil, Guimarães, João Tiago, Bastos, Helder Novais, Osório, Nuno S., Comas, Iñaki, Saraiva, Margarida
Publicado 2020

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches

por Otchere, Isaac Darko, Coscollá, Mireia, Sánchez-Busó, Leonor, Asante-Poku, Adwoa, Brites, Daniela, Loiseau, Chloe, Meehan, Conor, Osei-Wusu, Stephen, Forson, Audrey, Laryea, Clement, Yahayah, Abdallah Iddrisu, Baddoo, Akosua, Ansa, Gloria Akosua, Aboagye, Samuel Yaw, Asare, Prince, Borrell, Sonia, Gehre, Florian, Beckert, Patrick, Kohl, Thomas A., N’dira, Sanoussi, Beisel, Christian, Antonio, Martin, Niemann, Stefan, de Jong, Bouke C., Parkhill, Julian, Harris, Simon R., Gagneux, Sebastien, Yeboah-Manu, Dorothy
Publicado 2018

Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history

por Coscolla, Mireia, Gagneux, Sebastien, Menardo, Fabrizio, Loiseau, Chloé, Ruiz-Rodriguez, Paula, Borrell, Sonia, Otchere, Isaac Darko, Asante-Poku, Adwoa, Asare, Prince, Sánchez-Busó, Leonor, Gehre, Florian, Sanoussi, C. N’Dira, Antonio, Martin, Affolabi, Dissou, Fyfe, Janet, Beckert, Patrick, Niemann, Stefan, Alabi, Abraham S., Grobusch, Martin P., Kobbe, Robin, Parkhill, Julian, Beisel, Christian, Fenner, Lukas, Böttger, Erik C., Meehan, Conor J., Harris, Simon R., de Jong, Bouke C., Yeboah-Manu, Dorothy, Brites, Daniela
Publicado 2021

Genomic Analysis Identifies Targets of Convergent Positive Selection in Drug Resistant Mycobacterium tuberculosis

por Farhat, Maha R, Shapiro, B Jesse, Kieser, Karen J, Sultana, Razvan, Jacobson, Karen R, Victor, Thomas C, Warren, Robin M, Streicher, Elizabeth M, Calver, Alistair, Sloutsky, Alex, Kaur, Devinder, Posey, Jamie E, Plikaytis, Bonnie, Oggioni, Marco R, Gardy, Jennifer L, Johnston, James C, Rodrigues, Mabel, Tang, Patrick K C, Kato-Maeda, Midori, Borowsky, Mark L, Muddukrishna, Bhavana, Kreiswirth, Barry N, Kurepina, Natalia, Galagan, James, Gagneux, Sebastien, Birren, Bruce, Rubin, Eric J, Lander, Eric S, Sabeti, Pardis C, Murray, Megan
Publicado 2013

Leprosy in wild chimpanzees

por Hockings, Kimberley J., Mubemba, Benjamin, Avanzi, Charlotte, Pleh, Kamilla, Düx, Ariane, Bersacola, Elena, Bessa, Joana, Ramon, Marina, Metzger, Sonja, Patrono, Livia V., Jaffe, Jenny E., Benjak, Andrej, Bonneaud, Camille, Busso, Philippe, Couacy-Hymann, Emmanuel, Gado, Moussa, Gagneux, Sebastien, Johnson, Roch C., Kodio, Mamoudou, Lynton-Jenkins, Joshua, Morozova, Irina, Mätz-Rensing, Kerstin, Regalla, Aissa, Said, Abílio R., Schuenemann, Verena J., Sow, Samba O., Spencer, John S., Ulrich, Markus, Zoubi, Hyacinthe, Cole, Stewart T., Wittig, Roman M., Calvignac-Spencer, Sebastien, Leendertz, Fabian H.
Publicado 2021

The Influence of Host and Bacterial Genotype on the Development of Disseminated Disease with Mycobacterium tuberculosis

por Caws, Maxine, Thwaites, Guy, Dunstan, Sarah, Hawn, Thomas R., Thi Ngoc Lan, Nguyen, Thuong, Nguyen Thuy Thuong, Stepniewska, Kasia, Huyen, Mai Nguyet Thu, Bang, Nguyen Duc, Huu Loc, Tran, Gagneux, Sebastien, van Soolingen, Dick, Kremer, Kristin, van der Sande, Marianne, Small, Peter, Thi Hoang Anh, Phan, Chinh, Nguyen Tran, Thi Quy, Hoang, Thi Hong Duyen, Nguyen, Quang Tho, Dau, Hieu, Nguyen T., Torok, Estee, Hien, Tran Tinh, Dung, Nguyen Huy, Thi Quynh Nhu, Nguyen, Duy, Phan Minh, van Vinh Chau, Nguyen, Farrar, Jeremy
Publicado 2008

A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis

por Miotto, Paolo, Tessema, Belay, Tagliani, Elisa, Chindelevitch, Leonid, Starks, Angela M., Emerson, Claudia, Hanna, Debra, Kim, Peter S., Liwski, Richard, Zignol, Matteo, Gilpin, Christopher, Niemann, Stefan, Denkinger, Claudia M., Fleming, Joy, Warren, Robin M., Crook, Derrick, Posey, James, Gagneux, Sebastien, Hoffner, Sven, Rodrigues, Camilla, Comas, Iñaki, Engelthaler, David M., Murray, Megan, Alland, David, Rigouts, Leen, Lange, Christoph, Dheda, Keertan, Hasan, Rumina, Ranganathan, Uma Devi K., McNerney, Ruth, Ezewudo, Matthew, Cirillo, Daniela M., Schito, Marco, Köser, Claudio U., Rodwell, Timothy C.
Publicado 2017

Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania

por Zwyer, Michaela, Rutaihwa, Liliana K., Windels, Etthel, Hella, Jerry, Menardo, Fabrizio, Sasamalo, Mohamed, Sommer, Gregor, Schmülling, Lena, Borrell, Sonia, Reinhard, Miriam, Dötsch, Anna, Hiza, Hellen, Stritt, Christoph, Sikalengo, George, Fenner, Lukas, De Jong, Bouke C., Kato-Maeda, Midori, Jugheli, Levan, Ernst, Joel D., Niemann, Stefan, Jeljeli, Leila, Ballif, Marie, Egger, Matthias, Rakotosamimanana, Niaina, Yeboah-Manu, Dorothy, Asare, Prince, Malla, Bijaya, Dou, Horng Yunn, Zetola, Nicolas, Wilkinson, Robert J., Cox, Helen, Carter, E Jane, Gnokoro, Joachim, Yotebieng, Marcel, Gotuzzo, Eduardo, Abimiku, Alash’le, Avihingsanon, Anchalee, Xu, Zhi Ming, Fellay, Jacques, Portevin, Damien, Reither, Klaus, Stadler, Tanja, Gagneux, Sebastien, Brites, Daniela
Publicado 2023

Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim

por Menardo, Fabrizio, Rutaihwa, Liliana K., Zwyer, Michaela, Borrell, Sonia, Comas, Iñaki, Conceição, Emilyn Costa, Coscolla, Mireia, Cox, Helen, Joloba, Moses, Dou, Horng-Yunn, Feldmann, Julia, Fenner, Lukas, Fyfe, Janet, Gao, Qian, García de Viedma, Darío, Garcia-Basteiro, Alberto L., Gygli, Sebastian M., Hella, Jerry, Hiza, Hellen, Jugheli, Levan, Kamwela, Lujeko, Kato-Maeda, Midori, Liu, Qingyun, Ley, Serej D., Loiseau, Chloe, Mahasirimongkol, Surakameth, Malla, Bijaya, Palittapongarnpim, Prasit, Rakotosamimanana, Niaina, Rasolofo, Voahangy, Reinhard, Miriam, Reither, Klaus, Sasamalo, Mohamed, Silva Duarte, Rafael, Sola, Christophe, Suffys, Philip, Batista Lima, Karla Valeria, Yeboah-Manu, Dorothy, Beisel, Christian, Brites, Daniela, Gagneux, Sebastien
Publicado 2021

Mycobacterium tuberculosis Lineage 4 comprises globally distributed and geographically restricted sublineages

por Stucki, David, Brites, Daniela, Jeljeli, Leïla, Coscolla, Mireia, Liu, Qingyun, Trauner, Andrej, Fenner, Lukas, Rutaihwa, Liliana, Borrell, Sonia, Luo, Tao, Gao, Qian, Kato-Maeda, Midori, Ballif, Marie, Egger, Matthias, Macedo, Rita, Mardassi, Helmi, Moreno, Milagros, Tudo Vilanova, Griselda, Fyfe, Janet, Globan, Maria, Thomas, Jackson, Jamieson, Frances, Guthrie, Jennifer L., Asante-Poku, Adwoa, Yeboah-Manu, Dorothy, Wampande, Eddie, Ssengooba, Willy, Joloba, Moses, Henry Boom, W., Basu, Indira, Bower, James, Saraiva, Margarida, Vaconcellos, Sidra E. G., Suffys, Philip, Koch, Anastasia, Wilkinson, Robert, Gail-Bekker, Linda, Malla, Bijaya, Ley, Serej D., Beck, Hans-Peter, de Jong, Bouke C., Toit, Kadri, Sanchez-Padilla, Elisabeth, Bonnet, Maryline, Gil-Brusola, Ana, Frank, Matthias, Penlap Beng, Veronique N., Eisenach, Kathleen, Alani, Issam, Wangui Ndung’u, Perpetual, Revathi, Gunturu, Gehre, Florian, Akter, Suriya, Ntoumi, Francine, Stewart-Isherwood, Lynsey, Ntinginya, Nyanda E., Rachow, Andrea, Hoelscher, Michael, Cirillo, Daniela Maria, Skenders, Girts, Hoffner, Sven, Bakonyte, Daiva, Stakenas, Petras, Diel, Roland, Crudu, Valeriu, Moldovan, Olga, Al-Hajoj, Sahal, Otero, Larissa, Barletta, Francesca, Jane Carter, E., Diero, Lameck, Supply, Philip, Comas, Iñaki, Niemann, Stefan, Gagneux, Sebastien
Publicado 2016