A synthetic biology approach to probing nucleosome symmetry

por Ichikawa, Yuichi, Connelly, Caitlin F, Appleboim, Alon, Miller, Thomas CR, Jacobi, Hadas, Abshiru, Nebiyu A, Chou, Hsin-Jung, Chen, Yuanyuan, Sharma, Upasna, Zheng, Yupeng, Thomas, Paul M, Chen, Hsuiyi V, Bajaj, Vineeta, Müller, Christoph W, Kelleher, Neil L, Friedman, Nir, Bolon, Daniel NA, Rando, Oliver J, Kaufman, Paul D
Publicado 2017

Highly multiplexed, label-free proteoform imaging of tissues by individual ion mass spectrometry

por Su, Pei, McGee, John P., Durbin, Kenneth R., Hollas, Michael A. R., Yang, Manxi, Neumann, Elizabeth K., Allen, Jamie L., Drown, Bryon S., Butun, Fatma Ayaloglu, Greer, Joseph B., Early, Bryan P., Fellers, Ryan T., Spraggins, Jeffrey M., Laskin, Julia, Camarillo, Jeannie M., Kafader, Jared O., Kelleher, Neil L.
Publicado 2022

Mapping Intact Protein Isoforms in Discovery Mode Using Top Down Proteomics

por Tran, John C., Zamdborg, Leonid, Ahlf, Dorothy R., Lee, Ji Eun, Catherman, Adam D., Durbin, Kenneth R., Tipton, Jeremiah D., Vellaichamy, Adaikkalam, Kellie, John F., Li, Mingxi, Wu, Cong, Sweet, Steve M. M., Early, Bryan P., Siuti, Nertila, LeDuc, Richard D., Compton, Philip D., Thomas, Paul M., Kelleher, Neil L.
Publicado 2011

C16orf72/HAPSTR1 is a molecular rheostat in an integrated network of stress response pathways

por Amici, David R., Ansel, Daniel J., Metz, Kyle A., Smith, Roger S., Phoumyvong, Claire M., Gayatri, Sitaram, Chamera, Tomasz, Edwards, Stacey L., O’Hara, Brendan P., Srivastava, Shashank, Brockway, Sonia, Takagishi, Seesha R., Cho, Byoung-Kyu, Goo, Young Ah, Kelleher, Neil L., Ben-Sahra, Issam, Foltz, Daniel R., Li, Jian, Mendillo, Marc L.
Publicado 2022

An informatic framework for decoding protein complexes by top-down mass spectrometry

por Skinner, Owen S., Havugimana, Pierre C., Haverland, Nicole A., Fornelli, Luca, Early, Bryan P., Greer, Joseph B., Fellers, Ryan T., Durbin, Kenneth R., Do Vale, Luis H. F., Melani, Rafael D., Seckler, Henrique S., Nelp, Micah T., Belov, Mikhail E., Horning, Stevan R., Makarov, Alexander A., LeDuc, Richard D., Bandarian, Vahe, Compton, Philip D., Kelleher, Neil L.
Publicado 2016

Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids

por Martin, Rey W., Des Soye, Benjamin J., Kwon, Yong-Chan, Kay, Jennifer, Davis, Roderick G., Thomas, Paul M., Majewska, Natalia I., Chen, Cindy X., Marcum, Ryan D., Weiss, Mary Grace, Stoddart, Ashleigh E., Amiram, Miriam, Ranji Charna, Arnaz K., Patel, Jaymin R., Isaacs, Farren J., Kelleher, Neil L., Hong, Seok Hoon, Jewett, Michael C.
Publicado 2018

New Views of Old Proteins: Clarifying the Enigmatic Proteome

por Burnum-Johnson, Kristin E., Conrads, Thomas P., Drake, Richard R., Herr, Amy E., Iyengar, Ravi, Kelly, Ryan T., Lundberg, Emma, MacCoss, Michael J., Naba, Alexandra, Nolan, Garry P., Pevzner, Pavel A., Rodland, Karin D., Sechi, Salvatore, Slavov, Nikolai, Spraggins, Jeffrey M., Van Eyk, Jennifer E., Vidal, Marc, Vogel, Christine, Walt, David R., Kelleher, Neil L.
Publicado 2022

Enhanced binding of antibodies generated during chronic HIV infection to mucus component MUC16

por Gunn, Bronwyn, Schneider, Jeffrey, Shansab, Maryam, Bastian, Arangassery Rosemary, Fahrbach, Kelly, Smith, Archer, Mahan, Alison, Karim, Marcus, Licht, Anna, Zvonar, Ivan, Tedesco, Jacquelynn, Anderson, Meegan, Chapel, Anais, Suscovich, Todd, Malaspina, David, Streeck, Hendrik, Walker, Bruce D., Kim, Arthur, Lauer, Georg, Altfeld, Marcus, Pillai, Shiv, Szleifer, Igal, Kelleher, Neil L., Kiser, Patrick F., Hope, Thomas J., Alter, Galit
Publicado 2016

Bulk IgG glycosylation predicts COVID-19 severity and vaccine antibody response

por Ash, Michelle K., Bhimalli, Pavan P., Cho, Byoung-Kyu, Mattamana, Basil Baby, Gambut, Stéphanie, Tarhoni, Imad, Fhied, Cristina L., Reyes, Anjelica F., Welninski, Samantha J., Arivalagan, Jaison, Negrão, Fernanda, Goel, Renu, Beck, Todd L., Hope, Thomas J., Sha, Beverly E., Goo, Young Ah, Al-Harthi, Lena, Mamede, João I., Borgia, Jeffrey A., Kelleher, Neil L., Schneider, Jeffrey R.
Publicado 2022

A computational framework to explore large-scale biosynthetic diversity

por Navarro-Muñoz, Jorge C., Selem-Mojica, Nelly, Mullowney, Michael W., Kautsar, Satria A., Tryon, James H., Parkinson, Elizabeth I., De Los Santos, Emmanuel L.C., Yeong, Marley, Cruz-Morales, Pablo, Abubucker, Sahar, Roeters, Arne, Lokhorst, Wouter, Fernandez-Guerra, Antonio, Cappelini, Luciana Teresa Dias, Goering, Anthony W., Thomson, Regan J., Metcalf, William W., Kelleher, Neil L., Barona-Gomez, Francisco, Medema, Marnix H.
Publicado 2019

Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture

por Yusufova, Nevin, Kloetgen, Andreas, Teater, Matt, Osunsade, Adewola, Camarillo, Jeannie M., Chin, Christopher R., Doane, Ashley S., Venters, Bryan J., Portillo-Ledesma, Stephanie, Conway, Joseph, Phillip, Jude M., Elemento, Olivier, Scott, David W., Béguelin, Wendy, Licht, Jonathan D., Kelleher, Neil L., Staudt, Louis M, Skoultchi, Arthur I., Keogh, Michael-Christopher, Apostolou, Eftychia, Mason, Christopher E., Imielinski, Marcin, Schlick, Tamar, David, Yael, Tsirigos, Aristotelis, Allis, C. David, Soshnev, Alexey A., Cesarman, Ethel, Melnick, Ari M.
Publicado 2020

Loss of BAP1 function leads to EZH2-dependent transformation

por LaFave, Lindsay M., Béguelin, Wendy, Koche, Richard, Teater, Matt, Spitzer, Barbara, Chramiec, Alan, Papalexi, Efthymia, Keller, Matthew D., Hricik, Todd, Konstantinoff, Katerina, Micol, Jean-Baptiste, Durham, Benjamin, Knutson, Sarah K., Campbell, John E., Blum, Gil, Shi, Xinxu, Doud, Emma H., Krivtsov, Andrei V., Chung, Young Rock, Khodos, Inna, de Stanchina, Elisa, Ouerfelli, Ouathek, Adusumilli, Prasad S., Thomas, Paul M., Kelleher, Neil L., Luo, Minkui, Keilhack, Heike, Abdel-Wahab, Omar, Melnick, Ari, Armstrong, Scott A., Levine, Ross L.
Publicado 2015

Best practices and benchmarks for intact protein analysis for top-down mass spectrometry

por Donnelly, Daniel P., Rawlins, Catherine M., DeHart, Caroline J., Fornelli, Luca, Schachner, Luis F., Lin, Ziqing, Lippens, Jennifer L., Aluri, Krishna C., Sarin, Richa, Chen, Bifan, Lantz, Carter, Jung, Wonhyeuk, Johnson, Kendall R., Koller, Antonius, Wolff, Jeremy J., Campuzano, Iain D. G., Auclair, Jared R., Ivanov, Alexander R., Whitelegge, Julian P., Paša-Tolić, Ljiljana, Chamot-Rooke, Julia, Danis, Paul O., Smith, Lloyd M., Tsybin, Yury O., Loo, Joseph A., Ge, Ying, Kelleher, Neil L., Agar, Jeffrey N.
Publicado 2019

Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging

por Quardokus, Ellen M., Saunders, Diane C., McDonough, Elizabeth, Hickey, John W., Werlein, Christopher, Surrette, Christine, Rajbhandari, Presha, Casals, Anna Martinez, Tian, Hua, Lowery, Lisa, Neumann, Elizabeth K., Björklund, Frida, Neelakantan, Taruna V., Croteau, Josh, Wiblin, Anne E., Fisher, Jeremy, Livengood, April J., Dowell, Karen G., Silverstein, Jonathan C., Spraggins, Jeffrey M., Pryhuber, Gloria S., Deutsch, Gail, Ginty, Fiona, Nolan, Garry P., Melov, Simon, Jonigk, Danny, Caldwell, Michael A., Vlachos, Ioannis S., Muller, Werner, Gehlenborg, Nils, Stockwell, Brent R., Lundberg, Emma, Snyder, Michael P., Germain, Ronald N., Camarillo, Jeannie M., Kelleher, Neil L., Börner, Katy, Radtke, Andrea J.
Publicado 2023

A community resource for paired genomic and metabolomic data mining

por Schorn, Michelle A., Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D., Aksenov, Alexander A., Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T., Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D., Baunach, Martin, Beemelmanns, Christine, Beman, J. Michael, Berlanga-Clavero, María Victoria, Blacutt, Alex A., Bode, Helge B., Boullie, Anne, Brejnrod, Asker, Bugni, Tim S., Calteau, Alexandra, Cao, Liu, Carrión, Víctor J., Castelo-Branco, Raquel, Chanana, Shaurya, Chase, Alexander B., Chevrette, Marc G., Costa-Lotufo, Leticia V., Crawford, Jason M., Currie, Cameron R., Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M., Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J., Edlund, Anna, Fewer, David P., Garg, Neha, Gauglitz, Julia M., Gentry, Emily C., Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillén Matus, Dulce G., Helfrich, Eric J. N., Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R., Kang, Kyo Bin, Kaysser, Leonard, Kelleher, Neil L., Kim, Chung Sub, Kim, Ki Hyun, Koester, Irina, König, Gabriele M., Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C., Maloney, Katherine N., Männle, Daniel, Martin H., Christian, McAvoy, Andrew C., Metcalf, Willam W., Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S., Mullowney, Michael W., Muskat, Mitchell, Nothias, Louis-Félix, O’Neill, Ellis C., Parkinson, Elizabeth I., Petras, Daniel, Piel, Jörn, Pierce, Emily C., Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M. Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M., Sørensen, Søren Johannes, Sosio, Margherita, Süssmuth, Roderich D., Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J., Tobias, Nicholas J., Trindade-Silva, Amaro E., van Wezel, Gilles P., Wang, Mingxun, Weldon, Kelly C., Zhang, Fan, Ziemert, Nadine, Duncan, Katherine R., Crüsemann, Max, Rogers, Simon, Dorrestein, Pieter C., Medema, Marnix H., van der Hooft, Justin J. J.
Publicado 2021