Single-cell temporal dynamics reveals the relative contributions of transcription and degradation to cell-type specific gene expression in zebrafish embryos

por Fishman, Lior, Nechooshtan, Gal, Erhard, Florian, Regev, Aviv, Farrell, Jeffrey A., Rabani, Michal
Publicado 2023

The Role of Nucleosome Positioning in the Evolution of Gene Regulation

por Tsankov, Alexander M., Thompson, Dawn Anne, Socha, Amanda, Regev, Aviv, Rando, Oliver J.
Publicado 2010

Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

por Haas, Brian J., Dobin, Alexander, Li, Bo, Stransky, Nicolas, Pochet, Nathalie, Regev, Aviv
Publicado 2019

Genome-scale identification of transcription factors that mediate an inflammatory network during breast cellular transformation

por Ji, Zhe, He, Lizhi, Rotem, Asaf, Janzer, Andreas, Cheng, Christine S., Regev, Aviv, Struhl, Kevin
Publicado 2018

Identification of transcriptional regulators in the mouse immune system

por Jojic, Vladimir, Shay, Tal, Sylvia, Katelyn, Zuk, Or, Sun, Xin, Kang, Joonsoo, Regev, Aviv, Koller, Daphne
Publicado 2013

Enforcement of developmental lineage specificity by transcription factor Oct1

por Shen, Zuolian, Kang, Jinsuk, Shakya, Arvind, Tabaka, Marcin, Jarboe, Elke A, Regev, Aviv, Tantin, Dean
Publicado 2017

A unique regulatory phase of DNA methylation in the early mammalian embryo

por Smith, Zachary D., Chan, Michelle M., Mikkelsen, Tarjei S., Gu, Hongcang, Gnirke, Andreas, Regev, Aviv, Meissner, Alexander
Publicado 2012

Induction of pathogenic Th17 cells by inducible salt sensing kinase SGK1

por Wu, Chuan, Yosef, Nir, Thalhamer, Theresa, Zhu, Chen, Xiao, Sheng, Kishi, Yasuhiro, Regev, Aviv, Kuchroo, Vijay
Publicado 2013

Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

por de Boer, Carl G., Vaishnav, Eeshit Dhaval, Sadeh, Ronen, Abeyta, Esteban Luis, Friedman, Nir, Regev, Aviv
Publicado 2019

Combinatorial prediction of marker panels from single‐cell transcriptomic data

por Delaney, Conor, Schnell, Alexandra, Cammarata, Louis V, Yao‐Smith, Aaron, Regev, Aviv, Kuchroo, Vijay K, Singer, Meromit
Publicado 2019

Cell Atlas of The Human Fovea and Peripheral Retina

por Yan, Wenjun, Peng, Yi-Rong, van Zyl, Tavé, Regev, Aviv, Shekhar, Karthik, Juric, Dejan, Sanes, Joshua R.
Publicado 2020

Comprehensive comparative analysis of strand-specific RNA sequencing methods

por Levin, Joshua Z., Yassour, Moran, Adiconis, Xian, Nusbaum, Chad, Thompson, Dawn Anne, Friedman, Nir, Gnirke, Andreas, Regev, Aviv
Publicado 2010

DNA methylation dynamics of the human preimplantation embryo

por Smith, Zachary D., Chan, Michelle M., Humm, Kathryn C., Karnik, Rahul, Mekhoubad, Shila, Regev, Aviv, Eggan, Kevin, Meissner, Alexander
Publicado 2014

Y(MAP): a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens

por Abbey, Darren A, Funt, Jason, Lurie-Weinberger, Mor N, Thompson, Dawn A, Regev, Aviv, Myers, Chad L, Berman, Judith
Publicado 2014

Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector

por Haas, Brian J., Dobin, Alexander, Ghandi, Mahmoud, Van Arsdale, Anne, Tickle, Timothy, Robinson, James T., Gillani, Riaz, Kasif, Simon, Regev, Aviv
Publicado 2023

Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

por Yassour, Moran, Pfiffner, Jenna, Levin, Joshua Z, Adiconis, Xian, Gnirke, Andreas, Nusbaum, Chad, Thompson, Dawn-Anne, Friedman, Nir, Regev, Aviv
Publicado 2010

Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules

por Roy, Sushmita, Wapinski, Ilan, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Konieczka, Jay, Habib, Naomi, Kellis, Manolis, Thompson, Dawn, Regev, Aviv
Publicado 2013

Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs

por Chen, Jenny, Shishkin, Alexander A., Zhu, Xiaopeng, Kadri, Sabah, Maza, Itay, Guttman, Mitchell, Hanna, Jacob H., Regev, Aviv, Garber, Manuel
Publicado 2016

A Switch in p53 Dynamics Marks Cells That Escape from DSB-Induced Cell Cycle Arrest

por Tsabar, Michael, Mock, Caroline S., Venkatachalam, Veena, Reyes, Jose, Karhohs, Kyle W., Oliver, Trudy G., Regev, Aviv, Jambhekar, Ashwini, Lahav, Galit
Publicado 2020

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

por Gat-Viks, Irit, Chevrier, Nicolas, Wilentzik, Roni, Eisenhaure, Thomas, Raychowdhury, Raktima, Steuerman, Yael, Shalek, Alex, Hacohen, Nir, Amit, Ido, Regev, Aviv
Publicado 2013