A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

per Deng, Xianding, Gu, Wei, Federman, Scot, du Plessis, Louis, Pybus, Oliver G., Faria, Nuno, Wang, Candace, Yu, Guixia, Pan, Chao-Yang, Guevara, Hugo, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Servellita, Venice, Hsu, Elaine, Miller, Steve, Bedford, Trevor, Greninger, Alexander L., Roychoudhury, Pavitra, Starita, Lea M., Famulare, Michael, Chu, Helen Y., Shendure, Jay, Jerome, Keith R., Anderson, Catie, Gangavarapu, Karthik, Zeller, Mark, Spencer, Emily, Andersen, Kristian G., MacCannell, Duncan, Paden, Clinton R., Li, Yan, Zhang, Jing, Tong, Suxiang, Armstrong, Gregory, Morrow, Scott, Willis, Matthew, Matyas, Bela T., Mase, Sundari, Kasirye, Olivia, Park, Maggie, Chan, Curtis, Yu, Alexander T., Chai, Shua J., Villarino, Elsa, Bonin, Brandon, Wadford, Debra A., Chiu, Charles Y.
Publicat 2020

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

per Müller, Nicola F., Wagner, Cassia, Frazar, Chris D., Roychoudhury, Pavitra, Lee, Jover, Moncla, Louise H., Pelle, Benjamin, Richardson, Matthew, Ryke, Erica, Xie, Hong, shrestha, Lasata, Addetia, Amin, Rachleff, Victoria M., Lieberman, Nicole A. P., Huang, Meei-Li, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Adler, Amanda, Brandstetter, Elisabeth, Han, Peter D., Fay, Kairsten, llcisin, Misja, Lacombe, Kristen, Sibley, Thomas R., Truong, Melissa, Wolf, Caitlin R., Boeckh, Michael, Englund, Janet A., Famulare, Michael, Lutz, Barry R., Rieder, Mark J., Thompson, Matthew, Duchin, Jeffrey S., Starita, Lea M., Chu, Helen Y., Shendure, Jay, Jerome, Keith R., Lindquist, Scott, Greninger, Alexander L., Nickerson, Deborah A., Bedford, Trevor
Publicat 2020

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

per Müller, Nicola F., Wagner, Cassia, Frazar, Chris D., Roychoudhury, Pavitra, Lee, Jover, Moncla, Louise H., Pelle, Benjamin, Richardson, Matthew, Ryke, Erica, Xie, Hong, Shrestha, Lasata, Addetia, Amin, Rachleff, Victoria M., Lieberman, Nicole A. P., Huang, Meei-Li, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Adler, Amanda, Brandstetter, Elisabeth, Han, Peter D., Fay, Kairsten, Ilcisin, Misja, Lacombe, Kirsten, Sibley, Thomas R., Truong, Melissa, Wolf, Caitlin R., Boeckh, Michael, Englund, Janet A., Famulare, Michael, Lutz, Barry R., Rieder, Mark J., Thompson, Matthew, Duchin, Jeffrey S., Starita, Lea M., Chu, Helen Y., Shendure, Jay, Jerome, Keith R., Lindquist, Scott, Greninger, Alexander L., Nickerson, Deborah A., Bedford, Trevor
Publicat 2021

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

per Deng, Xianding, Gu, Wei, Federman, Scot, du Plessis, Louis, Pybus, Oliver G., Faria, Nuno, Wang, Candace, Yu, Guixia, Bushnell, Brian, Pan, Chao-Yang, Guevara, Hugo, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Servellita, Venice, Hsu, Elaine, Miller, Steve, Bedford, Trevor, Greninger, Alexander L., Roychoudhury, Pavitra, Starita, Lea M., Famulare, Michael, Chu, Helen Y., Shendure, Jay, Jerome, Keith R., Anderson, Catie, Gangavarapu, Karthik, Zeller, Mark, Spencer, Emily, Andersen, Kristian G., MacCannell, Duncan, Paden, Clinton R., Li, Yan, Zhang, Jing, Tong, Suxiang, Armstrong, Gregory, Morrow, Scott, Willis, Matthew, Matyas, Bela T., Mase, Sundari, Kasirye, Olivia, Park, Maggie, Masinde, Godfred, Chan, Curtis, Yu, Alexander T., Chai, Shua J., Villarino, Elsa, Bonin, Brandon, Wadford, Debra A., Chiu, Charles Y.
Publicat 2020

Cryptic transmission of SARS-CoV-2 in Washington State

per Bedford, Trevor, Greninger, Alexander L., Roychoudhury, Pavitra, Starita, Lea M., Famulare, Michael, Huang, Meei-Li, Nalla, Arun, Pepper, Gregory, Reinhardt, Adam, Xie, Hong, Shrestha, Lasata, Nguyen, Truong N, Adler, Amanda, Brandstetter, Elisabeth, Cho, Shari, Giroux, Danielle, Han, Peter D., Fay, Kairsten, Frazar, Chris D., Ilcisin, Misja, Lacombe, Kirsten, Lee, Jover, Kiavand, Anahita, Richardson, Matthew, Sibley, Thomas R., Truong, Melissa, Wolf, Caitlin R., Nickerson, Deborah A., Rieder, Mark J., Englund, Janet A., Hadfield, James, Hodcroft, Emma B., Huddleston, John, Moncla, Louise H., Müller, Nicola F., Neher, Richard A., Deng, Xianding, Gu, Wei, Federman, Scot, Chiu, Charles, Duchin, Jeff, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Lindquist, Scott, Queen, Krista, Tao, Ying, Uehara, Anna, Tong, Suxiang, MacCannell, Duncan, Armstrong, Gregory L., Baird, Geoffrey S., Chu, Helen Y., Shendure, Jay, Jerome, Keith R.
Publicat 2020

Cryptic transmission of SARS-CoV-2 in Washington state

per Bedford, Trevor, Greninger, Alexander L., Roychoudhury, Pavitra, Starita, Lea M., Famulare, Michael, Huang, Meei-Li, Nalla, Arun, Pepper, Gregory, Reinhardt, Adam, Xie, Hong, Shrestha, Lasata, Nguyen, Truong N., Adler, Amanda, Brandstetter, Elisabeth, Cho, Shari, Giroux, Danielle, Han, Peter D., Fay, Kairsten, Frazar, Chris D., Ilcisin, Misja, Lacombe, Kirsten, Lee, Jover, Kiavand, Anahita, Richardson, Matthew, Sibley, Thomas R., Truong, Melissa, Wolf, Caitlin R., Nickerson, Deborah A., Rieder, Mark J., Englund, Janet A., Hadfield, James, Hodcroft, Emma B., Huddleston, John, Moncla, Louise H., Müller, Nicola F., Neher, Richard A., Deng, Xianding, Gu, Wei, Federman, Scot, Chiu, Charles, Duchin, Jeffrey S., Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Lindquist, Scott, Queen, Krista, Tao, Ying, Uehara, Anna, Tong, Suxiang, MacCannell, Duncan, Armstrong, Gregory L., Baird, Geoffrey S., Chu, Helen Y., Shendure, Jay, Jerome, Keith R.
Publicat 2020

PIK3CA-associated developmental disorders exhibit distinct classes of mutations with variable expression and tissue distribution

per Mirzaa, Ghayda, Timms, Andrew E., Conti, Valerio, Boyle, Evan August, Girisha, Katta M., Martin, Beth, Kircher, Martin, Olds, Carissa, Juusola, Jane, Collins, Sarah, Park, Kaylee, Carter, Melissa, Glass, Ian, Krägeloh-Mann, Inge, Chitayat, David, Parikh, Aditi Shah, Bradshaw, Rachael, Torti, Erin, Braddock, Stephen, Burke, Leah, Ghedia, Sondhya, Stephan, Mark, Stewart, Fiona, Prasad, Chitra, Napier, Melanie, Saitta, Sulagna, Straussberg, Rachel, Gabbett, Michael, O’Connor, Bridget C., Keegan, Catherine E., Yin, Lim Jiin, Lai, Angeline Hwei Meeng, Martin, Nicole, McKinnon, Margaret, Addor, Marie-Claude, Boccuto, Luigi, Schwartz, Charles E., Lanoel, Agustina, Conway, Robert L., Devriendt, Koenraad, Tatton-Brown, Katrina, Pierpont, Mary Ella, Painter, Michael, Worgan, Lisa, Reggin, James, Hennekam, Raoul, Tsuchiya, Karen, Pritchard, Colin C., Aracena, Mariana, Gripp, Karen W., Cordisco, Maria, Van Esch, Hilde, Garavelli, Livia, Curry, Cynthia, Goriely, Anne, Kayserilli, Hulya, Shendure, Jay, Graham, John, Guerrini, Renzo, Dobyns, William B.
Publicat 2016

Genome evolution in the allotetraploid frog Xenopus laevis

per Session, Adam M., Uno, Yoshinobu, Kwon, Taejoon, Chapman, Jarrod A., Toyoda, Atsushi, Takahashi, Shuji, Fukui, Akimasa, Hikosaka, Akira, Suzuki, Atsushi, Kondo, Mariko, van Heeringen, Simon J., Quigley, Ian, Heinz, Sven, Ogino, Hajime, Ochi, Haruki, Hellsten, Uffe, Lyons, Jessica B, Simakov, Oleg, Putnam, Nicholas, Stites, Jonathan, Kuroki, Yoko, Tanaka, Toshiaki, Michiue, Tatsuo, Watanabe, Minoru, Bogdanovic, Ozren, Lister, Ryan, Georgiou, Georgios, Paranjpe, Sarita S., van Kruijsbergen, Ila, Shu, Shengquiang, Carlson, Joseph, Kinoshita, Tsutomu, Ohta, Yuko, Mawaribuchi, Shuuji, Jenkins, Jerry, Grimwood, Jane, Schmutz, Jeremy, Mitros, Therese, Mozaffari, Sahar, Suzuki, Yutaka, Haramoto, Yoshikazu, Yamamoto, Takamasa S., Takagi, Chiyo, Heald, Rebecca, Miller, Kelly, Haudenschild, Christian, Kitzman, Jacob, Nakayama, Takuya, Izutsu, Yumi, Robert, Jacques, Fortriede, Joshua, Burns, Kevin, Lotay, Vaneet, Karimi, Kamran, Yasuoka, Yuuri, Dichmann, Darwin S., Flajnik, Martin F., Houston, Douglas W, Shendure, Jay, DuPasquier, Louis, Vize, Peter D., Zorn, Aaron M., Ito, Michihiko, Marcotte, Ed, Wallingford, John B., Ito, Yuzuru, Asashima, Makoto, Ueno, Naoto, Matsuda, Yoichi, Veenstra, Gert Jan C., Fujiyama, Asao, Harland, Richard M., Taira, Masanori, Rokhsar, Daniel S.
Publicat 2016

An siRNA-based functional genomics screen for the identification of regulators of ciliogenesis and ciliopathy genes

per Wheway, Gabrielle, Schmidts, Miriam, Mans, Dorus A., Szymanska, Katarzyna, Nguyen, Thanh-Minh T., Racher, Hilary, Phelps, Ian G., Toedt, Grischa, Kennedy, Julie, Wunderlich, Kirsten A., Sorusch, Nasrin, Abdelhamed, Zakia A., Natarajan, Subaashini, Herridge, Warren, van Reeuwijk, Jeroen, Horn, Nicola, Boldt, Karsten, Parry, David A., Letteboer, Stef J.F., Roosing, Susanne, Adams, Matthew, Bell, Sandra M., Bond, Jacquelyn, Higgins, Julie, Morrison, Ewan E., Tomlinson, Darren C., Slaats, Gisela G., van Dam, Teunis J. P., Huang, Lijia, Kessler, Kristin, Giessl, Andreas, Logan, Clare V., Boyle, Evan A., Shendure, Jay, Anazi, Shamsa, Aldahmesh, Mohammed, Al Hazzaa, Selwa, Hegele, Robert A., Ober, Carole, Frosk, Patrick, Mhanni, Aizeddin A., Chodirker, Bernard N., Chudley, Albert E., Lamont, Ryan, Bernier, Francois P., Beaulieu, Chandree L., Gordon, Paul, Pon, Richard T., Donahue, Clem, Barkovich, A. James, Wolf, Louis, Toomes, Carmel, Thiel, Christian T., Boycott, Kym M., McKibbin, Martin, Inglehearn, Chris F., Stewart, Fiona, Omran, Heymut, Huynen, Martijn A., Sergouniotis, Panagiotis I., Alkuraya, Fowzan S., Parboosingh, Jillian S., Innes, A Micheil, Willoughby, Colin E., Giles, Rachel H., Webster, Andrew R., Ueffing, Marius, Blacque, Oliver, Gleeson, Joseph G., Wolfrum, Uwe, Beales, Philip L., Gibson, Toby, Doherty, Dan, Mitchison, Hannah M., Roepman, Ronald, Johnson, Colin A.
Publicat 2015

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

per Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F
Publicat 2013