Alternative Splicing of Differentiated Myeloid Cell Transcripts after Infection by Anaplasma phagocytophilum Impacts a Selective Group of Cellular Programs

por Dumler, J. Stephen, Sinclair, Sara H., Shetty, Amol C.
Publicado 2018

Genome-Wide Anaplasma phagocytophilum AnkA-DNA Interactions Are Enriched in Intergenic Regions and Gene Promoters and Correlate with Infection-Induced Differential Gene Expression

por Dumler, J. Stephen, Sinclair, Sara H., Pappas-Brown, Valeria, Shetty, Amol C.
Publicado 2016

Effect of a small molecule Lipid II binder on bacterial cell wall stress

por Malin, Jakob, Shetty, Amol C, Daugherty, Sean C, de Leeuw, Erik PH
Publicado 2017

Novel Host Pathways Govern Epithelial Cell Invasion of Aspergillus fumigatus

por Liu, Hong, Shetty, Amol C., Ibrahim, Ashraf S., Filler, Scott G., Bruno, Vincent M.
Publicado 2023

Comparative transcriptomics from intestinal cells of permissive and non-permissive hosts during Ancylostoma ceylanicum infection reveals unique signatures of protection and host sp...

por Langeland, Andrea, Grill, Emilia, Shetty, Amol C., O'Halloran, Damien M., Hawdon, John M.
Publicado 2023

Transcriptional Variation of Diverse Enteropathogenic Escherichia coli Isolates under Virulence-Inducing Conditions

por Hazen, Tracy H., Daugherty, Sean C., Shetty, Amol C., Nataro, James P., Rasko, David A.
Publicado 2017

Identification of rare X-linked neuroligin variants by massively parallel sequencing in males with autism spectrum disorder

por Steinberg, Karyn Meltz, Ramachandran, Dhanya, Patel, Viren C, Shetty, Amol C, Cutler, David J, Zwick, Michael E
Publicado 2012

Transcriptomic Analysis of Vulvovaginal Candidiasis Identifies a Role for the NLRP3 Inflammasome

por Bruno, Vincent M., Shetty, Amol C., Yano, Junko, Fidel, Paul L., Noverr, Mairi C., Peters, Brian M.
Publicado 2015

An optimized protocol for single nuclei isolation from clinical biopsies for RNA-seq

por Rousselle, Thomas V., McDaniels, Jennifer M., Shetty, Amol C., Bardhi, Elissa, Maluf, Daniel G., Mas, Valeria R.
Publicado 2022

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli

por Hazen, Tracy H., Michalski, Jane, Luo, Qingwei, Shetty, Amol C., Daugherty, Sean C., Fleckenstein, James M., Rasko, David A.
Publicado 2017

Tobacco Hornworm (Manduca sexta) caterpillars as a novel host model for the study of fungal virulence and drug efficacy

por Lyons, Naomi, Softley, Isabel, Balfour, Andrew, Williamson, Carolyn, O’Brien, Heath E., Shetty, Amol C., Bruno, Vincent M., Diezmann, Stephanie
Publicado 2020

Repeated sampling facilitates within- and between-subject modeling of the human sperm transcriptome to identify dynamic and stress-responsive sncRNAs

por Morgan, Christopher P., Shetty, Amol C., Chan, Jennifer C., Berger, Dara S., Ament, Seth A., Epperson, C. Neill, Bale, Tracy L.
Publicado 2020

Candida albicans quorum-sensing molecule farnesol modulates staphyloxanthin production and activates the thiol-based oxidative-stress response in Staphylococcus aureus

por Vila, Taissa, Kong, Eric F., Ibrahim, Ahmed, Piepenbrink, Kurt, Shetty, Amol C., McCracken, Carrie, Bruno, Vincent, Jabra-Rizk, Mary Ann
Publicado 2019

Therapeutic implications of C. albicans-S. aureus mixed biofilm in a murine subcutaneous catheter model of polymicrobial infection

por Vila, Taissa, Kong, Eric F., Montelongo-Jauregui, Daniel, Van Dijck, Patrick, Shetty, Amol C., McCracken, Carrie, Bruno, Vincent M., Jabra-Rizk, Mary Ann
Publicado 2021

Best practices on the differential expression analysis of multi-species RNA-seq

por Chung, Matthew, Bruno, Vincent M., Rasko, David A., Cuomo, Christina A., Muñoz, José F., Livny, Jonathan, Shetty, Amol C., Mahurkar, Anup, Dunning Hotopp, Julie C.
Publicado 2021

Brain feminization requires active repression of masculinization via DNA methylation

por Nugent, Bridget M., Wright, Christopher L., Shetty, Amol C., Hodes, Georgia E., Lenz, Kathryn M., Mahurkar, Anup, Russo, Scott J., Devine, Scott E., McCarthy, Margaret M.
Publicado 2015

Cost effective, experimentally robust differential-expression analysis for human/mammalian, pathogen and dual-species transcriptomics

por Shetty, Amol C., Mattick, John, Chung, Matthew, McCracken, Carrie, Mahurkar, Anup, Filler, Scott G., Fraser, Claire M., Rasko, David A., Bruno, Vincent M., Dunning Hotopp, Julie C.
Publicado 2019

Inhibition of EGFR Signaling Protects from Mucormycosis

por Watkins, Tonya N., Gebremariam, Teclegiorgis, Swidergall, Marc, Shetty, Amol C., Graf, Karen T., Alqarihi, Abdullah, Alkhazraji, Sondus, Alsaadi, Abrar I., Edwards, Vonetta L., Filler, Scott G., Ibrahim, Ashraf S., Bruno, Vincent M.
Publicado 2018

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

por Chung, Matthew, Adkins, Ricky S., Mattick, John S. A., Bradwell, Katie R., Shetty, Amol C., Sadzewicz, Lisa, Tallon, Luke J., Fraser, Claire M., Rasko, David A., Mahurkar, Anup, Dunning Hotopp, Julie C.
Publicado 2021

Tornadic Shear Stress Induces a Transient, Calcineurin-Dependent Hypervirulent Phenotype in Mucorales Molds

por Wurster, Sebastian, Tatara, Alexander M., Albert, Nathaniel D., Ibrahim, Ashraf S., Heitman, Joseph, Lee, Soo Chan, Shetty, Amol C., McCracken, Carrie, Graf, Karen T., Mikos, Antonios G., Bruno, Vincent M., Kontoyiannis, Dimitrios P.
Publicado 2020