Epigenetic profiling for the molecular classification of metastatic brain tumors

por Orozco, Javier I. J., Knijnenburg, Theo A., Manughian-Peter, Ayla O., Salomon, Matthew P., Barkhoudarian, Garni, Jalas, John R., Wilmott, James S., Hothi, Parvinder, Wang, Xiaowen, Takasumi, Yuki, Buckland, Michael E., Thompson, John F., Long, Georgina V., Cobbs, Charles S., Shmulevich, Ilya, Kelly, Daniel F., Scolyer, Richard A., Hoon, Dave S. B., Marzese, Diego M.
Publicado 2018

Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

por Gao, Qingsong, Liang, Wen-Wei, Foltz, Steven M., Mutharasu, Gnanavel, Jayasinghe, Reyka G., Cao, Song, Liao, Wen-Wei, Reynolds, Sheila M., Wyczalkowski, Matthew A., Yao, Lijun, Yu, Lihua, Sun, Sam Q., Chen, Ken, Lazar, Alexander J., Fields, Ryan C., Wendl, Michael C., Van Tine, Brian A., Vij, Ravi, Chen, Feng, Nykter, Matti, Shmulevich, Ilya, Ding, Li
Publicado 2018

Systematic Analysis of Splice-Site-Creating Mutations in Cancer

por Jayasinghe, Reyka G., Cao, Song, Gao, Qingsong, Wendl, Michael C., Vo, Nam Sy, Reynolds, Sheila M., Zhao, Yanyan, Climente-González, Héctor, Chai, Shengjie, Wang, Fang, Varghese, Rajees, Huang, Mo, Liang, Wen-Wei, Wyczalkowski, Matthew A., Sengupta, Sohini, Li, Zhi, Payne, Samuel H., Fenyö, David, Miner, Jeffrey H., Walter, Matthew J., Vincent, Benjamin, Eyras, Eduardo, Chen, Ken, Shmulevich, Ilya, Chen, Feng, Ding, Li
Publicado 2018

NCI Imaging Data Commons

por Fedorov, Andrey, Longabaugh, William J.R., Pot, David, Clunie, David A., Pieper, Steve, Aerts, Hugo J.W.L., Homeyer, André, Lewis, Rob, Akbarzadeh, Afshin, Bontempi, Dennis, Clifford, William, Herrmann, Markus D., Höfener, Henning, Octaviano, Igor, Osborne, Chad, Paquette, Suzanne, Petts, James, Punzo, Davide, Reyes, Madelyn, Schacherer, Daniela P., Tian, Mi, White, George, Ziegler, Erik, Shmulevich, Ilya, Pihl, Todd, Wagner, Ulrike, Farahani, Keyvan, Kikinis, Ron
Publicado 2021

Genomic and molecular characterization of preterm birth

por Knijnenburg, Theo A., Vockley, Joseph G., Chambwe, Nyasha, Gibbs, David L., Humphries, Crystal, Huddleston, Kathi C., Klein, Elisabeth, Kothiyal, Prachi, Tasseff, Ryan, Dhankani, Varsha, Bodian, Dale L., Wong, Wendy S. W., Glusman, Gustavo, Mauldin, Denise E., Miller, Michael, Slagel, Joseph, Elasady, Summer, Roach, Jared C., Kramer, Roger, Leinonen, Kalle, Linthorst, Jasper, Baveja, Rajiv, Baker, Robin, Solomon, Benjamin D., Eley, Greg, Iyer, Ramaswamy K., Maxwell, George L., Bernard, Brady, Shmulevich, Ilya, Hood, Leroy, Niederhuber, John E.
Publicado 2019

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

por Xavier, Joao B., Young, Vincent B., Skufca, Joseph, Ginty, Fiona, Testerman, Traci, Pearson, Alexander T., Macklin, Paul, Mitchell, Amir, Shmulevich, Ilya, Xie, Lei, Caporaso, J. Gregory, Crandall, Keith A., Simone, Nicole L., Godoy-Vitorino, Filipa, Griffin, Timothy J., Whiteson, Katrine L., Gustafson, Heather H., Slade, Daniel J., Schmidt, Thomas M., Walther-Antonio, Marina R.S., Korem, Tal, Webb-Robertson, Bobbie-Jo M., Styczynski, Mark P., Johnson, W. Evan, Jobin, Christian, Ridlon, Jason M., Koh, Andrew Y., Yu, Michael, Kelly, Libusha, Wargo, Jennifer A.
Publicado 2020

Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation

por Stahlberg, Eric A., Abdel-Rahman, Mohamed, Aguilar, Boris, Asadpoure, Alireza, Beckman, Robert A., Borkon, Lynn L., Bryan, Jeffrey N., Cebulla, Colleen M., Chang, Young Hwan, Chatterjee, Ansu, Deng, Jun, Dolatshahi, Sepideh, Gevaert, Olivier, Greenspan, Emily J., Hao, Wenrui, Hernandez-Boussard, Tina, Jackson, Pamela R., Kuijjer, Marieke, Lee, Adrian, Macklin, Paul, Madhavan, Subha, McCoy, Matthew D., Mohammad Mirzaei, Navid, Razzaghi, Talayeh, Rocha, Heber L., Shahriyari, Leili, Shmulevich, Ilya, Stover, Daniel G., Sun, Yi, Syeda-Mahmood, Tanveer, Wang, Jinhua, Wang, Qi, Zervantonakis, Ioannis
Publicado 2022

Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas

por Knijnenburg, Theo A., Wang, Linghua, Zimmermann, Michael T., Chambwe, Nyasha, Gao, Galen F., Cherniack, Andrew D., Fan, Huihui, Shen, Hui, Way, Gregory P., Greene, Casey S., Liu, Yuexin, Akbani, Rehan, Feng, Bin, Donehower, Lawrence A., Miller, Chase, Shen, Yang, Karimi, Mostafa, Chen, Haoran, Kim, Pora, Jia, Peilin, Shinbrot, Eve, Zhang, Shaojun, Liu, Jianfang, Hu, Hai, Bailey, Matthew H., Yau, Christina, Wolf, Denise, Zhao, Zhongming, Weinstein, John N., Li, Lei, Ding, Li, Mills, Gordon B., Laird, Peter W., Wheeler, David A., Shmulevich, Ilya, Monnat, Raymond J, Xiao, Yonghong, Wang, Chen
Publicado 2018

Mutational Landscapes of Smoking-Related Cancers in Caucasians and African Americans: Precision Oncology Perspectives at Wake Forest Baptist Comprehensive Cancer Center

por Kytola, Ville, Topaloglu, Umit, Miller, Lance D., Bitting, Rhonda L., Goodman, Michael M., D`Agostino, Ralph B., Desnoyers, Rodwige J., Albright, Carol, Yacoub, George, Qasem, Shadi A., DeYoung, Barry, Thorsson, Vesteinn, Shmulevich, Ilya, Yang, Meng, Shcherban, Anastasia, Pagni, Matthew, Liu, Liang, Nykter, Matti, Chen, Kexin, Hawkins, Gregory A., Grant, Stefan C., Petty, W. Jeffrey, Alistar, Angela Tatiana, Levine, Edward A., Staren, Edgar D., Langefeld, Carl D., Miller, Vincent, Singal, Gaurav, Petro, Robin M., Robinson, Mac, Blackstock, William, Powell, Bayard L., Wagner, Lynne I., Foley, Kristie L., Abraham, Edward, Pasche, Boris, Zhang, Wei
Publicado 2017

Progress toward a universal biomedical data translator

por Fecho, Karamarie, Thessen, Anne E., Baranzini, Sergio E., Bizon, Chris, Hadlock, Jennifer J., Huang, Sui, Roper, Ryan T., Southall, Noel, Ta, Casey, Watkins, Paul B., Williams, Mark D., Xu, Hao, Byrd, William, Dančík, Vlado, Duby, Marc P., Dumontier, Michel, Glusman, Gustavo, Harris, Nomi L., Hinderer, Eugene W., Hyde, Greg, Johs, Adam, Su, Andrew I., Qin, Guangrong, Zhu, Qian, Dougherty, Jennifer, Huang, Conrad, Magis, Andrew, Smith, Brett, Celebi, Remzi, Chen, Zhehuan, Azevedo, Ricardo De Miranda, Emonet, Vincent, Lee, Jay, Weng, Chunhua, Yilmaz, Arif, Kim, Keum Joo, Santos, Eugene, Tonstad, Lucas, Veenhuis, Luke, Yakaboski, Chase, Acevedo, Liliana, Carrell, Steven, Deutsch, Eric, Glen, Amy, Hoffman, Andrew, Koslicki, David, Kvarfordt, Lindsey, Liu, Zheng, Liu, Shaopeng, Ma, Chunyu, Mendoza, Luis, Muluka, Arun Teja, Womack, Finn, Wood, Erica, Roach, Jared, Goel, Prateek, Weber, Rosina, Williams, Andrew, Gormley, Joseph, Zisk, Tom, Hanspers, Kristina, Hoatlin, Maureen, Pico, Alexander, Riutta, Anders, Callaghan, Jackson, Xu, Colleen, Ahalt, Stanley C., Balhoff, Jim, Edwards, Stephen, Haaland, Perry, Knowles, Michael, Krishnamurthy, Ashok, Mandal, Meisha, Peden, David B., Pfaff, Emily, Schurman, Shepherd, Shrivastava, Shalki, Yi, Hong, Reilly, Jason, Kanwar, Richa, Cox, Steven, Vaidya, Gaurav, Wang, Max, Alkanaq, Ahmed, Costanzo, Maria, Koesterer, Ryan, Flannick, Jason, Burtt, Noel, Kluge, Alexandria, Rubin, Irit, Strasser, Michael “ Michi”, Chung, Lawrence, Kang, Jimin, Mantilla, Michelle, Muller, Sandrine, Persaud, Bria, Wei, Qi, Baumgartner, Andrew, Dai, Cheng, Duvvuri, Venkata, Mauldin, Denise, Shmulevich, Ilya, Brandon, Namdi, Greyber, Alon, Kebede, Yaphet, Korn, Daniel, Mesbah, Abrar, Owen, Phil, Sakaguchi, Rayn, Seitanakis, Sarah, Tropsha, Alexander, Viola, Adam, Hubal, Robert, Mersmann, Marian, Morton, Kenny, Yao, Yao, Lin, Jason, Avila, Ricardo, Wu, Chunlei, Cano, Marco Alvarado, Gardner, Vicki, Issabekova, Tursynay, McMurry, Julie, Schaper, Kevin, Baumgartner, William, Cohen, Kevin, Gatica, Edgar, Hunter, Lawrence, Price, Guthrie, He, Kaiwen, Henrickson, Jeff, Mamidi, Tarun, Might, Matthew, Osborne, John, Patton, Michael, Rosenblatt, Greg, Tran‐Nguyen, Thi, Crouse, Andrew, Belhu, Basazin, Conlin, Tom, Huellas‐Bruskiewicz, Kenneth, Rudavsky‐Brody, Nathaniel, Shrestha, Manil, Stillwell, Lisa, von Grotthuss, Marcin, Wang, Patrick, Xin, Jiwen Kevin, Zhou, Xinghua, Champion, James, Scott, Erik, Sharma, Priya, Sinha, Meghamala, Raj, Shruti, Mease, Philip, Peene, R. Carter, McClelland, Jason, Schmitt, Charles P., Leigh, Margaret, Corkill, Dan, Zhou, Eric, Alden, John, Massung, Jeffrey, Brandes, Mac Kenzie, Amin, Nada, Chen, Mei‐Jan, Crowder, Camerron, Crumbley, Mary E., Fehrmann, Nathaniel, Foksinska, Aleksandra M., Jenkins, Lindsay, He, Kaiwen, Huls, Forest B., Jarrell, Matthew, Pollard, Elizabeth, Rucka, Sienna, Southern, Nicholas, Tinglin, Jillian, Whitlock, Jordan, Zheng, Marissa
Publicado 2022

Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

por Unni, Deepak R., Moxon, Sierra A. T., Bada, Michael, Brush, Matthew, Bruskiewich, Richard, Caufield, J. Harry, Clemons, Paul A., Dancik, Vlado, Dumontier, Michel, Fecho, Karamarie, Glusman, Gustavo, Hadlock, Jennifer J., Harris, Nomi L., Joshi, Arpita, Putman, Tim, Qin, Guangrong, Ramsey, Stephen A., Shefchek, Kent A., Solbrig, Harold, Soman, Karthik, Thessen, Anne E., Haendel, Melissa A., Bizon, Chris, Mungall, Christopher J., Acevedo, Liliana, Ahalt, Stanley C., Alden, John, Alkanaq, Ahmed, Amin, Nada, Avila, Ricardo, Balhoff, Jim, Baranzini, Sergio E., Baumgartner, Andrew, Baumgartner, William, Belhu, Basazin, Brandes, MacKenzie, Brandon, Namdi, Burtt, Noel, Byrd, William, Callaghan, Jackson, Cano, Marco Alvarado, Carrell, Steven, Celebi, Remzi, Champion, James, Chen, Zhehuan, Chen, Mei‐Jan, Chung, Lawrence, Cohen, Kevin, Conlin, Tom, Corkill, Dan, Costanzo, Maria, Cox, Steven, Crouse, Andrew, Crowder, Camerron, Crumbley, Mary E., Dai, Cheng, Dančík, Vlado, De Miranda Azevedo, Ricardo, Deutsch, Eric, Dougherty, Jennifer, Duby, Marc P., Duvvuri, Venkata, Edwards, Stephen, Emonet, Vincent, Fehrmann, Nathaniel, Flannick, Jason, Foksinska, Aleksandra M., Gardner, Vicki, Gatica, Edgar, Glen, Amy, Goel, Prateek, Gormley, Joseph, Greyber, Alon, Haaland, Perry, Hanspers, Kristina, He, Kaiwen, He, Kaiwen, Henrickson, Jeff, Hinderer, Eugene W., Hoatlin, Maureen, Hoffman, Andrew, Huang, Sui, Huang, Conrad, Hubal, Robert, Huellas‐Bruskiewicz, Kenneth, Huls, Forest B., Hunter, Lawrence, Hyde, Greg, Issabekova, Tursynay, Jarrell, Matthew, Jenkins, Lindsay, Johs, Adam, Kang, Jimin, Kanwar, Richa, Kebede, Yaphet, Kim, Keum Joo, Kluge, Alexandria, Knowles, Michael, Koesterer, Ryan, Korn, Daniel, Koslicki, David, Krishnamurthy, Ashok, Kvarfordt, Lindsey, Lee, Jay, Leigh, Margaret, Lin, Jason, Liu, Zheng, Liu, Shaopeng, Ma, Chunyu, Magis, Andrew, Mamidi, Tarun, Mandal, Meisha, Mantilla, Michelle, Massung, Jeffrey, Mauldin, Denise, McClelland, Jason, McMurry, Julie, Mease, Philip, Mendoza, Luis, Mersmann, Marian, Mesbah, Abrar, Might, Matthew, Morton, Kenny, Muller, Sandrine, Muluka, Arun Teja, Osborne, John, Owen, Phil, Patton, Michael, Peden, David B., Peene, R. Carter, Persaud, Bria, Pfaff, Emily, Pico, Alexander, Pollard, Elizabeth, Price, Guthrie, Raj, Shruti, Reilly, Jason, Riutta, Anders, Roach, Jared, Roper, Ryan T., Rosenblatt, Greg, Rubin, Irit, Rucka, Sienna, Rudavsky‐Brody, Nathaniel, Sakaguchi, Rayn, Santos, Eugene, Schaper, Kevin, Schmitt, Charles P., Schurman, Shepherd, Scott, Erik, Seitanakis, Sarah, Sharma, Priya, Shmulevich, Ilya, Shrestha, Manil, Shrivastava, Shalki, Sinha, Meghamala, Smith, Brett, Southall, Noel, Southern, Nicholas, Stillwell, Lisa, Strasser, Michael " Michi", Su, Andrew I., Ta, Casey, Thessen, Anne E., Tinglin, Jillian, Tonstad, Lucas, Tran‐Nguyen, Thi, Tropsha, Alexander, Vaidya, Gaurav, Veenhuis, Luke, Viola, Adam, von Grotthuss, Marcin, Wang, Max, Wang, Patrick, Watkins, Paul B., Weber, Rosina, Wei, Qi, Weng, Chunhua, Whitlock, Jordan, Williams, Mark D., Williams, Andrew, Womack, Finn, Wood, Erica, Wu, Chunlei, Xin, Jiwen Kevin, Xu, Hao, Xu, Colleen, Yakaboski, Chase, Yao, Yao, Yi, Hong, Yilmaz, Arif, Zheng, Marissa, Zhou, Xinghua, Zhou, Eric, Zhu, Qian, Zisk, Tom
Publicado 2022