The Structured Coalescent and Its Approximations

por Müller, Nicola F., Rasmussen, David A., Stadler, Tanja
Publicado 2017

Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth–death model

por Barido-Sottani, Joëlle, Vaughan, Timothy G., Stadler, Tanja
Publicado 2018

A Multitype Birth–Death Model for Bayesian Inference of Lineage-Specific Birth and Death Rates

por Barido-Sottani, Joëlle, Vaughan, Timothy G, Stadler, Tanja
Publicado 2020

The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data

por Manceau, Marc, Gupta, Ankit, Vaughan, Timothy, Stadler, Tanja
Publicado 2021

Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

por Gavryushkina, Alexandra, Welch, David, Stadler, Tanja, Drummond, Alexei J.
Publicado 2014

Inferring Epidemiological Dynamics with Bayesian Coalescent Inference: The Merits of Deterministic and Stochastic Models

por Popinga, Alex, Vaughan, Tim, Stadler, Tanja, Drummond, Alexei J.
Publicado 2015

On the statistical analysis of single cell lineage trees

por Stadler, Tanja, Skylaki, Stavroula, D. Kokkaliaris, Konstantinos, Schroeder, Timm
Publicado 2018

Erratum to “On the statistical analysis of single cell lineage trees” [J. Theor. Biol. 439 (2018) 160–165]

por Stadler, Tanja, Skylaki, Stavroula, Kokkaliaris, Konstantinos D., Schroeder, Timm
Publicado 2020

On the Need for Mechanistic Models in Computational Genomics and Metagenomics

por Liberles, David A., Teufel, Ashley I., Liu, Liang, Stadler, Tanja
Publicado 2013

Using an Epidemiological Model for Phylogenetic Inference Reveals Density Dependence in HIV Transmission

por Leventhal, Gabriel E., Günthard, Huldrych F., Bonhoeffer, Sebastian, Stadler, Tanja
Publicado 2014

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model

por Kühnert, Denise, Stadler, Tanja, Vaughan, Timothy G., Drummond, Alexei J.
Publicado 2014

Insights into the Early Epidemic Spread of Ebola in Sierra Leone Provided by Viral Sequence Data

por Stadler, Tanja, Kühnert, Denise, Rasmussen, David A., du Plessis, Louis
Publicado 2014

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

por Kühnert, Denise, Stadler, Tanja, Vaughan, Timothy G., Drummond, Alexei J.
Publicado 2016

Phylodynamics on local sexual contact networks

por Rasmussen, David A., Kouyos, Roger, Günthard, Huldrych F., Stadler, Tanja
Publicado 2017

Bayesian Inference of Species Networks from Multilocus Sequence Data

por Zhang, Chi, Ogilvie, Huw A, Drummond, Alexei J, Stadler, Tanja
Publicado 2018

Closing the gap between palaeontological and neontological speciation and extinction rate estimates

por Silvestro, Daniele, Warnock, Rachel C. M., Gavryushkina, Alexandra, Stadler, Tanja
Publicado 2018

Joint Inference of Migration and Reassortment Patterns for Viruses with Segmented Genomes

por Stolz, Ugnė, Stadler, Tanja, Müller, Nicola F, Vaughan, Timothy G
Publicado 2021

Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss example

por Chen, Chaoran, Nadeau, Sarah, Topolsky, Ivan, Beerenwinkel, Niko, Stadler, Tanja
Publicado 2022

Exact vs. Approximate Computation: Reconciling Different Estimates of Mycobacterium tuberculosis Epidemiological Parameters

por Aandahl, R. Zachariah, Stadler, Tanja, Sisson, Scott A., Tanaka, Mark M.
Publicado 2014

Total-Evidence Dating under the Fossilized Birth–Death Process

por Zhang, Chi, Stadler, Tanja, Klopfstein, Seraina, Heath, Tracy A., Ronquist, Fredrik
Publicado 2016