Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data

por Chen, Xi, Wang, Yuan, Cappuccio, Antonio, Cheng, Wan-Sze, Zamojski, Frederique Ruf, Nair, Venugopalan D., Miller, Clare M., Rubenstein, Aliza B., Nudelman, German, Tadych, Alicja, Theesfeld, Chandra L., Vornholt, Alexandria, George, Mary-Catherine, Ruffin, Felicia, Dagher, Michael, Chawla, Daniel G., Soares-Schanoski, Alessandra, Spurbeck, Rachel R., Ndhlovu, Lishomwa C., Sebra, Robert, Kleinstein, Steven H., Letizia, Andrew G., Ramos, Irene, Fowler, Vance G., Woods, Christopher W., Zaslavsky, Elena, Troyanskaya, Olga G., Sealfon, Stuart C.
Publicado 2023

Viable virus shedding during SARS-CoV-2 reinfection

por Letizia, Andrew G, Smith, Darci R, Ge, Yongchao, Ramos, Irene, Sealfon, Rachel S G, Goforth, Carl, Gonzalez-Reiche, Ana S, Vangeti, Sindhu, Weir, Dawn L, Alshammary, Hala, Chen, Hua Wei, George, Mary-Catherine, Soares-Schanoski, Alessandra, Lizewski, Rhonda A, Lizewski, Stephen E, Marayag, Jan, Miller, Clare M, Nunez, Edgar, Porter, Chad K, Ana, Ernesto Santa, Schilling, Megan, Sugiharto, Victor A, Sun, Peifang, Termini, Michael, van de Guchte, Adriana, Troyanskaya, Olga G, van Bakel, Harm, Sealfon, Stuart C
Publicado 2021

SARS-CoV-2 receptor networks in diabetic and COVID-19–associated kidney disease

por Menon, Rajasree, Otto, Edgar A., Sealfon, Rachel, Nair, Viji, Wong, Aaron K., Theesfeld, Chandra L., Chen, Xi, Wang, Yuan, Boppana, Avinash S., Luo, Jinghui, Yang, Yingbao, Kasson, Peter M., Schaub, Jennifer A., Berthier, Celine C., Eddy, Sean, Lienczewski, Chrysta C., Godfrey, Bradley, Dagenais, Susan L., Sohaney, Ryann, Hartman, John, Fermin, Damian, Subramanian, Lalita, Looker, Helen C., Harder, Jennifer L., Mariani, Laura H., Hodgin, Jeffrey B., Sexton, Jonathan Z., Wobus, Christiane E., Naik, Abhijit S., Nelson, Robert G., Troyanskaya, Olga G., Kretzler, Matthias
Publicado 2020

Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection

por Sauerwald, Natalie, Zhang, Zijun, Ramos, Irene, Nair, Venugopalan D., Soares-Schanoski, Alessandra, Ge, Yongchao, Mao, Weiguang, Alshammary, Hala, Gonzalez-Reiche, Ana S., van de Guchte, Adriana, Goforth, Carl W., Lizewski, Rhonda A., Lizewski, Stephen E., Amper, Mary Anne S., Vasoya, Mital, Seenarine, Nitish, Guevara, Kristy, Marjanovic, Nada, Miller, Clare M., Nudelman, German, Schilling, Megan A., Sealfon, Rachel S.G., Termini, Michael S., Vangeti, Sindhu, Weir, Dawn L., Zaslavsky, Elena, Chikina, Maria, Wu, Ying Nian, Van Bakel, Harm, Letizia, Andrew G., Sealfon, Stuart C., Troyanskaya, Olga G.
Publicado 2022

Genomic analyses implicate noncoding de novo variants in congenital heart disease

por Richter, Felix, Morton, Sarah U., Won Kim, Seong, Kitaygorodsky, Alexander, Wasson, Lauren K., Chen, Kathleen M., Zhou, Jian, Qi, Hongjian, Patel, Nihir, DePalma, Steven R., Parfenov, Michael, Homsy, Jason, Gorham, Joshua M., Manheimer, Kathryn B., Velinder, Matthew, Farrell, Andrew, Marth, Gabor, Schadt, Eric E., Kaltman, Jonathan R., Newburger, Jane W., Giardini, Alessandro, Goldmuntz, Elizabeth, Brueckner, Martina, Kim, Richard, Porter, George A., Bernstein, Daniel, Chung, Wendy K., Srivastava, Deepak, Tristani-Firouzi, Martin, Troyanskaya, Olga G., Dickel, Diane E., Shen, Yufeng, Seidman, Jonathan G., Seidman, Christine E., Gelb, Bruce D.
Publicado 2020

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

por Peña-Castillo, Lourdes, Tasan, Murat, Myers, Chad L, Lee, Hyunju, Joshi, Trupti, Zhang, Chao, Guan, Yuanfang, Leone, Michele, Pagnani, Andrea, Kim, Wan Kyu, Krumpelman, Chase, Tian, Weidong, Obozinski, Guillaume, Qi, Yanjun, Mostafavi, Sara, Lin, Guan Ning, Berriz, Gabriel F, Gibbons, Francis D, Lanckriet, Gert, Qiu, Jian, Grant, Charles, Barutcuoglu, Zafer, Hill, David P, Warde-Farley, David, Grouios, Chris, Ray, Debajyoti, Blake, Judith A, Deng, Minghua, Jordan, Michael I, Noble, William S, Morris, Quaid, Klein-Seetharaman, Judith, Bar-Joseph, Ziv, Chen, Ting, Sun, Fengzhu, Troyanskaya, Olga G, Marcotte, Edward M, Xu, Dong, Hughes, Timothy R, Roth, Frederick P
Publicado 2008

SARS-CoV-2 Transmission among Marine Recruits during Quarantine

por Letizia, Andrew G., Ramos, Irene, Obla, Ajay, Goforth, Carl, Weir, Dawn L., Ge, Yongchao, Bamman, Marcas M., Dutta, Jayeeta, Ellis, Ethan, Estrella, Luis, George, Mary-Catherine, Gonzalez-Reiche, Ana S., Graham, William D., van de Guchte, Adriana, Gutierrez, Ramiro, Jones, Franca, Kalomoiri, Aspasia, Lizewski, Rhonda, Lizewski, Stephen, Marayag, Jan, Marjanovic, Nada, Millar, Eugene V., Nair, Venugopalan D., Nudelman, German, Nunez, Edgar, Pike, Brian L., Porter, Chad, Regeimbal, James, Rirak, Stas, Santa Ana, Ernesto, Sealfon, Rachel S.G., Sebra, Robert, Simons, Mark P., Soares-Schanoski, Alessandra, Sugiharto, Victor, Termini, Michael, Vangeti, Sindhu, Williams, Carlos, Troyanskaya, Olga G., van Bakel, Harm, Sealfon, Stuart C.
Publicado 2020

A reference tissue atlas for the human kidney

por Hansen, Jens, Sealfon, Rachel, Menon, Rajasree, Eadon, Michael T., Lake, Blue B., Steck, Becky, Anjani, Kavya, Parikh, Samir, Sigdel, Tara K., Zhang, Guanshi, Velickovic, Dusan, Barwinska, Daria, Alexandrov, Theodore, Dobi, Dejan, Rashmi, Priyanka, Otto, Edgar A., Rivera, Miguel, Rose, Michael P., Anderton, Christopher R., Shapiro, John P., Pamreddy, Annapurna, Winfree, Seth, Xiong, Yuguang, He, Yongqun, de Boer, Ian H., Hodgin, Jeffrey B., Barisoni, Laura, Naik, Abhijit S., Sharma, Kumar, Sarwal, Minnie M., Zhang, Kun, Himmelfarb, Jonathan, Rovin, Brad, El-Achkar, Tarek M., Laszik, Zoltan, He, John Cijiang, Dagher, Pierre C., Valerius, M. Todd, Jain, Sanjay, Satlin, Lisa M., Troyanskaya, Olga G., Kretzler, Matthias, Iyengar, Ravi, Azeloglu, Evren U.
Publicado 2022

SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures

por Lizewski, Rhonda A., Sealfon, Rachel S. G., Park, Sang Woo, Smith, Gregory R., Porter, Chad K., Gonzalez-Reiche, Ana S., Ge, Yongchao, Miller, Clare M., Goforth, Carl W., Pincas, Hanna, Termini, Michael S., Ramos, Irene, Nair, Venugopalan D., Lizewski, Stephen E., Alshammary, Hala, Cer, Regina Z., Chen, Hua Wei, George, Mary-Catherine, Arnold, Catherine E., Glang, Lindsay A., Long, Kyle A., Malagon, Francisco, Marayag, Jan J., Nunez, Edgar, Rice, Gregory K., Santa Ana, Ernesto, Schilling, Megan A., Smith, Darci R., Sugiharto, Victor A., Sun, Peifang, van de Guchte, Adriana, Khan, Zenab, Dutta, Jayeeta, Vangeti, Sindhu, Voegtly, Logan J., Weir, Dawn L., Metcalf, C. Jessica E., Troyanskaya, Olga G., Bishop-Lilly, Kimberly A., Grenfell, Bryan T., van Bakel, Harm, Letizia, Andrew G., Sealfon, Stuart C.
Publicado 2022

A New System for Comparative Functional Genomics of Saccharomyces Yeasts

por Caudy, Amy A., Guan, Yuanfang, Jia, Yue, Hansen, Christina, DeSevo, Chris, Hayes, Alicia P., Agee, Joy, Alvarez-Dominguez, Juan R., Arellano, Hugo, Barrett, Daniel, Bauerle, Cynthia, Bisaria, Namita, Bradley, Patrick H., Breunig, J. Scott, Bush, Erin, Cappel, David, Capra, Emily, Chen, Walter, Clore, John, Combs, Peter A., Doucette, Christopher, Demuren, Olukunle, Fellowes, Peter, Freeman, Sam, Frenkel, Evgeni, Gadala-Maria, Daniel, Gawande, Richa, Glass, David, Grossberg, Samuel, Gupta, Anita, Hammonds-Odie, Latanya, Hoisos, Aaron, Hsi, Jenny, Hsu, Yu-Han Huang, Inukai, Sachi, Karczewski, Konrad J., Ke, Xiaobo, Kojima, Mina, Leachman, Samuel, Lieber, Danny, Liebowitz, Anna, Liu, Julia, Liu, Yufei, Martin, Trevor, Mena, Jose, Mendoza, Rosa, Myhrvold, Cameron, Millian, Christian, Pfau, Sarah, Raj, Sandeep, Rich, Matt, Rokicki, Joe, Rounds, William, Salazar, Michael, Salesi, Matthew, Sharma, Rajani, Silverman, Sanford, Singer, Cara, Sinha, Sandhya, Staller, Max, Stern, Philip, Tang, Hanlin, Weeks, Sharon, Weidmann, Maxwell, Wolf, Ashley, Young, Carmen, Yuan, Jie, Crutchfield, Christopher, McClean, Megan, Murphy, Coleen T., Llinás, Manuel, Botstein, David, Troyanskaya, Olga G., Dunham, Maitreya J.
Publicado 2013

New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.

por Shrine, Nick, Guyatt, Anna L, Erzurumluoglu, A Mesut, Jackson, Victoria E, Hobbs, Brian D, Melbourne, Carl A, Batini, Chiara, Fawcett, Katherine A, Song, Kijoung, Sakornsakolpat, Phuwanat, Li, Xingnan, Boxall, Ruth, Reeve, Nicola F, Obeidat, Ma’en, Zhao, Jing Hua, Wielscher, Matthias, Weiss, Stefan, Kentistou, Katherine A, Cook, James P, Sun, Benjamin B, Zhou, Jian, Hui, Jennie, Karrasch, Stefan, Imboden, Medea, Harris, Sarah E, Marten, Jonathan, Enroth, Stefan, Kerr, Shona M, Surakka, Ida, Vitart, Veronique, Lehtimäki, Terho, Allen, Richard J, Bakke, Per S, Beaty, Terri H, Bleecker, Eugene R, Bossé, Yohan, Brandsma, Corry-Anke, Chen, Zhengming, Crapo, James D, Danesh, John, DeMeo, Dawn L, Dudbridge, Frank, Ewert, Ralf, Gieger, Christian, Gulsvik, Amund, Hansell, Anna L, Hao, Ke, Hoffman, Joshua D, Hokanson, John E, Homuth, Georg, Joshi, Peter K, Joubert, Philippe, Langenberg, Claudia, Li, Xuan, Li, Liming, Lin, Kuang, Lind, Lars, Locantore, Nicholas, Luan, Jian’an, Mahajan, Anubha, Maranville, Joseph C, Murray, Alison, Nickle, David C, Packer, Richard, Parker, Margaret M, Paynton, Megan L, Porteous, David J, Prokopenko, Dmitry, Qiao, Dandi, Rawal, Rajesh, Runz, Heiko, Sayers, Ian, Sin, Don D, Smith, Blair H, Artigas, María Soler, Sparrow, David, Tal-Singer, Ruth, Timmers, Paul RHJ, Van den Berge, Maarten, Whittaker, John C, Woodruff, Prescott G, Yerges-Armstrong, Laura M, Troyanskaya, Olga G, Raitakari, Olli T, Kähönen, Mika, Polasek, Ozren, Gyllensten, Ulf, Rudan, Igor, Deary, Ian J, Probst-Hensch, Nicole M, Schulz, Holger, James, Alan L, Wilson, James F, Stubbe, Beate, Zeggini, Eleftheria, Jarvelin, Marjo-Riitta, Wareham, Nick, Silverman, Edwin K, Hayward, Caroline, Morris, Andrew P, Butterworth, Adam S, Scott, Robert A, Walters, Robin G, Meyers, Deborah A, Cho, Michael H, Strachan, David P, Hall, Ian P, Tobin, Martin D, Wain, Louise V
Publicado 2019