Spatial interplay of tissue hypoxia and T-cell regulation in ductal carcinoma in situ

por Sobhani, Faranak, Muralidhar, Sathya, Hamidinekoo, Azam, Hall, Allison H., King, Lorraine M., Marks, Jeffrey R., Maley, Carlo, Horlings, Hugo M., Hwang, E. Shelley, Yuan, Yinyin
Publicado 2022

Unmasking the immune microecology of ductal carcinoma in situ with deep learning

por Narayanan, Priya Lakshmi, Raza, Shan E. Ahmed, Hall, Allison H., Marks, Jeffrey R., King, Lorraine, West, Robert B., Hernandez, Lucia, Guppy, Naomi, Dowsett, Mitch, Gusterson, Barry, Maley, Carlo, Hwang, E. Shelley, Yuan, Yinyin
Publicado 2021

High inter‐follicular spatial co‐localization of CD8+FOXP3+ with CD4+CD8+ cells predicts favorable outcome in follicular lymphoma

por Hagos, Yeman B., Akarca, Ayse U., Ramsay, Alan, Rossi, Riccardo L., Pomplun, Sabine, Ngai, Victoria, Moioli, Alessia, Gianatti, Andrea, Mcnamara, Christopher, Rambaldi, Alessandro, Quezada, Sergio A., Linch, David, Gritti, Giuseppe, Yuan, Yinyin, Marafioti, Teresa
Publicado 2022

Analysis of heterogeneity in T(2)-weighted MR images can differentiate pseudoprogression from progression in glioblastoma

por Booth, Thomas C., Larkin, Timothy J., Yuan, Yinyin, Kettunen, Mikko I., Dawson, Sarah N., Scoffings, Daniel, Canuto, Holly C., Vowler, Sarah L., Kirschenlohr, Heide, Hobson, Michael P., Markowetz, Florian, Jefferies, Sarah, Brindle, Kevin M.
Publicado 2017

Spatial Positioning of Immune Hotspots Reflects the Interplay between B and T Cells in Lung Squamous Cell Carcinoma

por Zhang, Hanyun, AbdulJabbar, Khalid, Moore, David A., Akarca, Ayse, Enfield, Katey S.S., Jamal-Hanjani, Mariam, Raza, Shan E. Ahmed, Veeriah, Selvaraju, Salgado, Roberto, McGranahan, Nicholas, Le Quesne, John, Swanton, Charles, Marafioti, Teresa, Yuan, Yinyin
Publicado 2023

Non-Invasive Prostate Cancer Characterization with Diffusion-Weighted MRI: Insight from In silico Studies of a Transgenic Mouse Model

por Hill, Deborah K., Heindl, Andreas, Zormpas-Petridis, Konstantinos, Collins, David J., Euceda, Leslie R., Rodrigues, Daniel N., Moestue, Siver A., Jamin, Yann, Koh, Dow-Mu, Yuan, Yinyin, Bathen, Tone F., Leach, Martin O., Blackledge, Matthew D.
Publicado 2017

Bridging clinic and wildlife care with AI-powered pan-species computational pathology

por AbdulJabbar, Khalid, Castillo, Simon P., Hughes, Katherine, Davidson, Hannah, Boddy, Amy M., Abegglen, Lisa M., Minoli, Lucia, Iussich, Selina, Murchison, Elizabeth P., Graham, Trevor A., Spiro, Simon, Maley, Carlo C., Aresu, Luca, Palmieri, Chiara, Yuan, Yinyin
Publicado 2023

Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci

por Jäger, Roland, Migliorini, Gabriele, Henrion, Marc, Kandaswamy, Radhika, Speedy, Helen E., Heindl, Andreas, Whiffin, Nicola, Carnicer, Maria J., Broome, Laura, Dryden, Nicola, Nagano, Takashi, Schoenfelder, Stefan, Enge, Martin, Yuan, Yinyin, Taipale, Jussi, Fraser, Peter, Fletcher, Olivia, Houlston, Richard S.
Publicado 2015

Biomarkers for site-specific response to neoadjuvant chemotherapy in epithelial ovarian cancer: relating MRI changes to tumour cell load and necrosis

por Winfield, Jessica M., Wakefield, Jennifer C., Brenton, James D., AbdulJabbar, Khalid, Savio, Antonella, Freeman, Susan, Pace, Erika, Lutchman-Singh, Kerryn, Vroobel, Katherine M., Yuan, Yinyin, Banerjee, Susana, Porta, Nuria, Ahmed Raza, Shan E., deSouza, Nandita M.
Publicado 2021

Self-supervised deep learning for highly efficient spatial immunophenotyping

por Zhang, Hanyun, AbdulJabbar, Khalid, Grunewald, Tami, Akarca, Ayse U., Hagos, Yeman, Sobhani, Faranak, Lecat, Catherine S.Y., Patel, Dominic, Lee, Lydia, Rodriguez-Justo, Manuel, Yong, Kwee, Ledermann, Jonathan A., Le Quesne, John, Hwang, E. Shelley, Marafioti, Teresa, Yuan, Yinyin
Publicado 2023

Comparative Evaluation of Tumor-Infiltrating Lymphocytes in Companion Animals: Immuno-Oncology as a Relevant Translational Model for Cancer Therapy

por Pinard, Christopher J., Lagree, Andrew, Lu, Fang-I, Klein, Jonathan, Oblak, Michelle L., Salgado, Roberto, Cardenas, Juan Carlos Pinto, Brunetti, Barbara, Muscatello, Luisa Vera, Sarli, Giuseppe, Foschini, Maria Pia, Hardas, Alexandros, Castillo, Simon P., AbdulJabbar, Khalid, Yuan, Yinyin, Moore, David A., Tran, William T.
Publicado 2022

Classifying the evolutionary and ecological features of neoplasms

por Maley, Carlo C., Aktipis, Athena, Graham, Trevor A., Sottoriva, Andrea, Boddy, Amy M., Janiszewska, Michalina, Silva, Ariosto S., Gerlinger, Marco, Yuan, Yinyin, Pienta, Kenneth J., Anderson, Karen S., Gatenby, Robert, Swanton, Charles, Posada, David, Wu, Chung-I, Schiffman, Joshua D., Hwang, E. Shelley, Polyak, Kornelia, Anderson, Alexander R. A., Brown, Joel S., Greaves, Mel, Shibata, Darryl
Publicado 2017

A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer

por Vollan, Hans Kristian Moen, Rueda, Oscar M., Chin, Suet-Feung, Curtis, Christina, Turashvili, Gulisa, Shah, Sohrab, Lingjærde, Ole Christian, Yuan, Yinyin, Ng, Charlotte K., Dunning, Mark J., Dicks, Ed, Provenzano, Elena, Sammut, Stephen, McKinney, Steven, Ellis, Ian O., Pinder, Sarah, Purushotham, Arnie, Murphy, Leigh C., Kristensen, Vessela N., Brenton, James D., Pharoah, Paul D.P., Børresen-Dale, Anne-Lise, Aparicio, Samuel, Caldas, Carlos
Publicado 2014

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

por Curtis, Christina, Shah, Sohrab P., Chin, Suet-Feung, Turashvili, Gulisa, Rueda, Oscar M., Dunning, Mark J., Speed, Doug, Lynch, Andy G., Samarajiwa, Shamith, Yuan, Yinyin, Gräf, Stefan, Ha, Gavin, Haffari, Gholamreza, Bashashati, Ali, Russell, Roslin, McKinney, Steven, Langerød, Anita, Green, Andrew, Provenzano, Elena, Wishart, Gordon, Pinder, Sarah, Watson, Peter, Markowetz, Florian, Murphy, Leigh, Ellis, Ian, Purushotham, Arnie, Børresen-Dale, Anne-Lise, Brenton, James D., Tavaré, Simon, Caldas, Carlos, Aparicio, Samuel
Publicado 2012

Report on computational assessment of Tumor Infiltrating Lymphocytes from the International Immuno-Oncology Biomarker Working Group

por Amgad, Mohamed, Stovgaard, Elisabeth Specht, Balslev, Eva, Thagaard, Jeppe, Chen, Weijie, Dudgeon, Sarah, Sharma, Ashish, Kerner, Jennifer K., Denkert, Carsten, Yuan, Yinyin, AbdulJabbar, Khalid, Wienert, Stephan, Savas, Peter, Voorwerk, Leonie, Beck, Andrew H., Madabhushi, Anant, Hartman, Johan, Sebastian, Manu M., Horlings, Hugo M., Hudeček, Jan, Ciompi, Francesco, Moore, David A., Singh, Rajendra, Roblin, Elvire, Balancin, Marcelo Luiz, Mathieu, Marie-Christine, Lennerz, Jochen K., Kirtani, Pawan, Chen, I-Chun, Braybrooke, Jeremy P., Pruneri, Giancarlo, Demaria, Sandra, Adams, Sylvia, Schnitt, Stuart J., Lakhani, Sunil R., Rojo, Federico, Comerma, Laura, Badve, Sunil S., Khojasteh, Mehrnoush, Symmans, W. Fraser, Sotiriou, Christos, Gonzalez-Ericsson, Paula, Pogue-Geile, Katherine L., Kim, Rim S., Rimm, David L., Viale, Giuseppe, Hewitt, Stephen M., Bartlett, John M. S., Penault-Llorca, Frédérique, Goel, Shom, Lien, Huang-Chun, Loibl, Sibylle, Kos, Zuzana, Loi, Sherene, Hanna, Matthew G., Michiels, Stefan, Kok, Marleen, Nielsen, Torsten O., Lazar, Alexander J., Bago-Horvath, Zsuzsanna, Kooreman, Loes F. S., van der Laak, Jeroen A. W. M., Saltz, Joel, Gallas, Brandon D., Kurkure, Uday, Barnes, Michael, Salgado, Roberto, Cooper, Lee A. D.
Publicado 2020

Pitfalls in assessing stromal tumor infiltrating lymphocytes (sTILs) in breast cancer

por Kos, Zuzana, Roblin, Elvire, Kim, Rim S., Michiels, Stefan, Gallas, Brandon D., Chen, Weijie, van de Vijver, Koen K., Goel, Shom, Adams, Sylvia, Demaria, Sandra, Viale, Giuseppe, Nielsen, Torsten O., Badve, Sunil S., Symmans, W. Fraser, Sotiriou, Christos, Rimm, David L., Hewitt, Stephen, Denkert, Carsten, Loibl, Sibylle, Luen, Stephen J., Bartlett, John M. S., Savas, Peter, Pruneri, Giancarlo, Dillon, Deborah A., Cheang, Maggie Chon U., Tutt, Andrew, Hall, Jacqueline A., Kok, Marleen, Horlings, Hugo M., Madabhushi, Anant, van der Laak, Jeroen, Ciompi, Francesco, Laenkholm, Anne-Vibeke, Bellolio, Enrique, Gruosso, Tina, Fox, Stephen B., Araya, Juan Carlos, Floris, Giuseppe, Hudeček, Jan, Voorwerk, Leonie, Beck, Andrew H., Kerner, Jen, Larsimont, Denis, Declercq, Sabine, Van den Eynden, Gert, Pusztai, Lajos, Ehinger, Anna, Yang, Wentao, AbdulJabbar, Khalid, Yuan, Yinyin, Singh, Rajendra, Hiley, Crispin, Bakir, Maise al, Lazar, Alexander J., Naber, Stephen, Wienert, Stephan, Castillo, Miluska, Curigliano, Giuseppe, Dieci, Maria-Vittoria, André, Fabrice, Swanton, Charles, Reis-Filho, Jorge, Sparano, Joseph, Balslev, Eva, Chen, I-Chun, Stovgaard, Elisabeth Ida Specht, Pogue-Geile, Katherine, Blenman, Kim R. M., Penault-Llorca, Frédérique, Schnitt, Stuart, Lakhani, Sunil R., Vincent-Salomon, Anne, Rojo, Federico, Braybrooke, Jeremy P., Hanna, Matthew G., Soler-Monsó, M. Teresa, Bethmann, Daniel, Castaneda, Carlos A., Willard-Gallo, Karen, Sharma, Ashish, Lien, Huang-Chun, Fineberg, Susan, Thagaard, Jeppe, Comerma, Laura, Gonzalez-Ericsson, Paula, Brogi, Edi, Loi, Sherene, Saltz, Joel, Klaushen, Frederick, Cooper, Lee, Amgad, Mohamed, Moore, David A., Salgado, Roberto
Publicado 2020

Pitfalls in machine learning‐based assessment of tumor‐infiltrating lymphocytes in breast cancer: A report of the International Immuno‐Oncology Biomarker Working Group on Breast Ca...

por Thagaard, Jeppe, Broeckx, Glenn, Page, David B, Jahangir, Chowdhury Arif, Verbandt, Sara, Kos, Zuzana, Gupta, Rajarsi, Khiroya, Reena, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S, Alvarado‐Cabrero, Isabel, Amgad, Mohamed, Azmoudeh‐Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Balslev, Eva, Bellolio, Enrique R, Bheemaraju, Vydehi, Blenman, Kim RM, Botinelly Mendonça Fujimoto, Luciana, Bouchmaa, Najat, Burgues, Octavio, Chardas, Alexandros, Chon U Cheang, Maggie, Ciompi, Francesco, Cooper, Lee AD, Coosemans, An, Corredor, Germán, Dahl, Anders B, Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Doré Hansen, Johan, Dudgeon, Sarah N, Ebstrup, Thomas, Elghazawy, Mahmoud, Fernandez‐Martín, Claudio, Fox, Stephen B, Gallagher, William M, Giltnane, Jennifer M, Gnjatic, Sacha, Gonzalez‐Ericsson, Paula I, Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G, Harbhajanka, Aparna, Hart, Steven N, Hartman, Johan, Hauberg, Søren, Hewitt, Stephen, Hida, Akira I, Horlings, Hugo M, Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel AM, Kahila, Mohamed, Kataoka, Tatsuki R, Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I, Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L, Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne‐Vibeke, Lang‐Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K, Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K, Manur Narasimhamurthy, Vidya, Marks, Douglas K, McDonald, Elizabeth S, Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz ul Amir Afsar, Mittal, Shachi, Moore, David A, Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault‐Llorca, Frederique, Perera, Rashindrie D, Pinard, Christopher J, Pinto‐Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T, Reis‐Filho, Jorge S, Ribeiro, Joana M, Rimm, David, Roslind, Anne, Vincent‐Salomon, Anne, Salto‐Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Scott, Ely, Siziopikou, Kalliopi P, Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A, Sur, Daniel, Fineberg, Susan, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E Aubrey, Tramm, Trine, Tran, William T, van der Laak, Jeroen, van Diest, Paul J, Verghese, Gregory E, Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y, Yang, Wentao, Yuan, Yinyin, Zin, Reena Md, Adams, Sylvia, Bartlett, John, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, Specht Stovgaard, Elisabeth
Publicado 2023