Analysing miRNA-Target Gene Networks in Inflammatory Bowel Disease and Other Complex Diseases Using Transcriptomic Data

por Thomas, John P., Ölbei, Marton, Brooks-Warburton, Johanne, Korcsmaros, Tamas, Modos, Dezso
Publicado 2022

Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists

por Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Csabai, Luca, Olbei, Marton, Korcsmáros, Tamás, Szalay-Beko, Mate
Publicado 2023

ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins

por Demeter, Amanda, Romero-Mulero, Mari Carmen, Csabai, Luca, Ölbei, Márton, Sudhakar, Padhmanand, Haerty, Wilfried, Korcsmáros, Tamás
Publicado 2020

SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients

por Olbei, Marton, Hautefort, Isabelle, Modos, Dezso, Treveil, Agatha, Poletti, Martina, Gul, Lejla, Shannon-Lowe, Claire D., Korcsmaros, Tamas
Publicado 2021

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation

por Métris, Aline, Sudhakar, Padhmanand, Fazekas, David, Demeter, Amanda, Ari, Eszter, Olbei, Marton, Branchu, Priscilla, Kingsley, Rob A., Baranyi, Jozsef, Korcsmáros, Tamas
Publicado 2017

CytokineLink: A Cytokine Communication Map to Analyse Immune Responses—Case Studies in Inflammatory Bowel Disease and COVID-19

por Olbei, Marton, Thomas, John P., Hautefort, Isabelle, Treveil, Agatha, Bohar, Balazs, Madgwick, Matthew, Gul, Lejla, Csabai, Luca, Modos, Dezso, Korcsmaros, Tamas
Publicado 2021

Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level

por Olbei, Marton, Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Sudhakar, Padhmanand, Hautefort, Isabelle, Métris, Aline, Baranyi, Jozsef, Kingsley, Robert A., Korcsmaros, Tamas
Publicado 2022

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

por Treveil, Agatha, Bohar, Balazs, Sudhakar, Padhmanand, Gul, Lejla, Csabai, Luca, Olbei, Marton, Poletti, Martina, Madgwick, Matthew, Andrighetti, Tahila, Hautefort, Isabelle, Modos, Dezso, Korcsmaros, Tamas
Publicado 2021

Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

por Türei, Dénes, Valdeolivas, Alberto, Gul, Lejla, Palacio‐Escat, Nicolàs, Klein, Michal, Ivanova, Olga, Ölbei, Márton, Gábor, Attila, Theis, Fabian, Módos, Dezső, Korcsmáros, Tamás, Saez‐Rodriguez, Julio
Publicado 2021

Evolution of regulatory networks associated with traits under selection in cichlids

por Mehta, Tarang K., Koch, Christopher, Nash, Will, Knaack, Sara A., Sudhakar, Padhmanand, Olbei, Marton, Bastkowski, Sarah, Penso-Dolfin, Luca, Korcsmaros, Tamas, Haerty, Wilfried, Roy, Sushmita, Di-Palma, Federica
Publicado 2021

Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways

por Poletti, Martina, Treveil, Agatha, Csabai, Luca, Gul, Leila, Modos, Dezso, Madgwick, Matthew, Olbei, Marton, Bohar, Balazs, Valdeolivas, Alberto, Turei, Denes, Verstockt, Bram, Triana, Sergio, Alexandrov, Theodore, Saez-Rodriguez, Julio, Stanifer, Megan L., Boulant, Steeve, Korcsmaros, Tamas
Publicado 2022

Immune checkpoint inhibitor-induced colitis is mediated by polyfunctional lymphocytes and is dependent on an IL23/IFNγ axis

por Lo, Jonathan W., Cozzetto, Domenico, Alexander, James L., Danckert, Nathan P., Madgwick, Matthew, Knox, Naomi, Sieh, Jillian Yong Xin, Olbei, Marton, Liu, Zhigang, Ibraheim, Hajir, Blanco, Jesus Miguens, Kudo, Hiromi, Seoane, Rocio Castro, Possamai, Lucia A., Goldin, Robert, Marchesi, Julian, Korcsmaros, Tamas, Lord, Graham M., Powell, Nick
Publicado 2023

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks

por Csabai, Luca, Fazekas, Dávid, Kadlecsik, Tamás, Szalay-Bekő, Máté, Bohár, Balázs, Madgwick, Matthew, Módos, Dezső, Ölbei, Márton, Gul, Lejla, Sudhakar, Padhmanand, Kubisch, János, Oyeyemi, Oyebode James, Liska, Orsolya, Ari, Eszter, Hotzi, Bernadette, Billes, Viktor A, Molnár, Eszter, Földvári-Nagy, László, Csályi, Kitti, Demeter, Amanda, Pápai, Nóra, Koltai, Mihály, Varga, Máté, Lenti, Katalin, Farkas, Illés J, Türei, Dénes, Csermely, Péter, Vellai, Tibor, Korcsmáros, Tamás
Publicado 2021

The gut microbiota and metabolome are associated with diminished COVID-19 vaccine-induced antibody responses in immunosuppressed inflammatory bowel disease patients

por Alexander, James L., Mullish, Benjamin H., Danckert, Nathan P., Liu, Zhigang, Olbei, Marton L., Saifuddin, Aamir, Torkizadeh, Melissa, Ibraheim, Hajir, Blanco, Jesús Miguéns, Roberts, Lauren A., Bewshea, Claire M., Nice, Rachel, Lin, Simeng, Prabhudev, Hemanth, Sands, Caroline, Horneffer-van der Sluis, Verena, Lewis, Matthew, Sebastian, Shaji, Lees, Charlie W., Teare, Julian P., Hart, Ailsa, Goodhand, James R., Kennedy, Nicholas A., Korcsmaros, Tamas, Marchesi, Julian R., Ahmad, Tariq, Powell, Nick
Publicado 2023

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

por Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, Devasahayam Arokia Balaya, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Wilighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Publicado 2021

COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

por Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, D A B, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff‐Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Willighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Publicado 2021