SW#–GPU-enabled exact alignments on genome scale

por Korpar, Matija, Šikić, Mile
Publicado 2013

Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance

por Šošić, Martin, Šikić, Mile
Publicado 2017

Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests

por Šikić, Mile, Tomić, Sanja, Vlahoviček, Kristian
Publicado 2009

SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

por Korpar, Matija, Šošić, Martin, Blažeka, Dino, Šikić, Mile
Publicado 2015

Fast and accurate de novo genome assembly from long uncorrected reads

por Vaser, Robert, Sović, Ivan, Nagarajan, Niranjan, Šikić, Mile
Publicado 2017

Evaluation of tools for long read RNA-seq splice-aware alignment

por Križanović, Krešimir, Echchiki, Amina, Roux, Julien, Šikić, Mile
Publicado 2018

PSAIA – Protein Structure and Interaction Analyzer

por Mihel, Josip, Šikić, Mile, Tomić, Sanja, Jeren, Branko, Vlahoviček, Kristian
Publicado 2008

BioMe: biologically relevant metals

por Tus, Alan, Rakipović, Alen, Peretin, Goran, Tomić, Sanja, Šikić, Mile
Publicado 2012

Fast and sensitive mapping of nanopore sequencing reads with GraphMap

por Sović, Ivan, Šikić, Mile, Wilm, Andreas, Fenlon, Shannon Nicole, Chen, Swaine, Nagarajan, Niranjan
Publicado 2016

ExoLocator—an online view into genetic makeup of vertebrate proteins

por Khoo, Aik Aun, Ogrizek-Tomaš, Mario, Bulović, Ana, Korpar, Matija, Gürler, Ece, Slijepčević, Ivan, Šikić, Mile, Mihalek, Ivana
Publicado 2014

Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim ‘Agnes’ reveals metabolic pathways regulating floral traits

por Lim, Abner Herbert, Low, Zhen Jie, Shingate, Prashant Narendra, Hong, Jing Han, Chong, Shu Chen, Ng, Cedric Chuan Young, Liu, Wei, Vaser, Robert, Šikić, Mile, Sung, Wing-Kin Ken, Nagarajan, Niranjan, Tan, Patrick, Teh, Bin Tean
Publicado 2022

Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks

por Sandhu, Kuljeet Singh, Li, Guoliang, Poh, Huay Mei, Quek, Yu Ling Kelly, Sia, Yee Yen, Peh, Su Qin, Mulawadi, Fabianus Hendriyan, Lim, Joanne, Sikic, Mile, Menghi, Francesca, Thalamuthu, Anbupalam, Sung, Wing Kin, Ruan, Xiaoan, Fullwood, Melissa Jane, Liu, Edison, Csermely, Peter, Ruan, Yijun
Publicado 2012