Dynamic applicability domain (dAD): compound–target binding affinity estimates with local conformal prediction

por Oršolić, Davor, Šmuc, Tomislav
Publicado 2023

Combined Machine Learning and Molecular Modelling Workflow for the Recognition of Potentially Novel Fungicides

por Jović, Ozren, Šmuc, Tomislav
Publicado 2020

Search for Novel Lead Inhibitors of Yeast Cytochrome bc1, from Drugbank and COCONUT

por Jović, Ozren, Šmuc, Tomislav
Publicado 2021

Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype

por Mihelčić, Matej, Šmuc, Tomislav, Supek, Fran
Publicado 2019

From Knowledge Transmission to Knowledge Construction: A Step towards Human-Like Active Learning

por Kulikovskikh, Ilona, Lipic, Tomislav, Šmuc, Tomislav
Publicado 2020

Discovery science: 22nd international conference, DS 2019, Split, Croatia, October 28-30, 2019, proceedings

por Kralj Novak, Petra, Smuc, Tomislav, Džeroski, Saso
Publicado 2019

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

por Supek, Fran, Bošnjak, Matko, Škunca, Nives, Šmuc, Tomislav
Publicado 2011

The evolutionary signal in metagenome phyletic profiles predicts many gene functions

por Vidulin, Vedrana, Šmuc, Tomislav, Džeroski, Sašo, Supek, Fran
Publicado 2018

Comprehensive machine learning based study of the chemical space of herbicides

por Oršolić, Davor, Pehar, Vesna, Šmuc, Tomislav, Stepanić, Višnja
Publicado 2021

Translational Selection Is Ubiquitous in Prokaryotes

por Supek, Fran, Škunca, Nives, Repar, Jelena, Vlahoviček, Kristian, Šmuc, Tomislav
Publicado 2010

BioGD: Bio-inspired robust gradient descent

por Kulikovskikh, Ilona, Prokhorov, Sergej, Lipić, Tomislav, Legović, Tarzan, Šmuc, Tomislav
Publicado 2019

The landscape of microbial phenotypic traits and associated genes

por Brbić, Maria, Piškorec, Matija, Vidulin, Vedrana, Kriško, Anita, Šmuc, Tomislav, Supek, Fran
Publicado 2016

Proteome sequence features carry signatures of the environmental niche of prokaryotes

por Smole, Zlatko, Nikolic, Nela, Supek, Fran, Šmuc, Tomislav, Sbalzarini, Ivo F, Krisko, Anita
Publicado 2011

Using redescription mining to relate clinical and biological characteristics of cognitively impaired and Alzheimer’s disease patients

por Mihelčić, Matej, Šimić, Goran, Babić Leko, Mirjana, Lavrač, Nada, Džeroski, Sašo, Šmuc, Tomislav
Publicado 2017

In Vitro Confirmation of Siramesine as a Novel Antifungal Agent with In Silico Lead Proposals of Structurally Related Antifungals

por Vlainić, Josipa, Jović, Ozren, Kosalec, Ivan, Vugrek, Oliver, Čož-Rakovac, Rozelindra, Šmuc, Tomislav
Publicado 2021

Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships

por Škunca, Nives, Bošnjak, Matko, Kriško, Anita, Panov, Panče, Džeroski, Sašo, Šmuc, Tomislav, Supek, Fran
Publicado 2013

Cohesiveness in Financial News and its Relation to Market Volatility

por Piškorec, Matija, Antulov-Fantulin, Nino, Novak, Petra Kralj, Mozetič, Igor, Grčar, Miha, Vodenska, Irena, Šmuc, Tomislav
Publicado 2014

Chemical Evaluation, Antioxidant, Antiproliferative, Anti-Inflammatory and Antibacterial Activities of Organic Extract and Semi-Purified Fractions of the Adriatic Sea Fan, Eunicell...

por Matulja, Dario, Grbčić, Petra, Bojanić, Krunoslav, Topić-Popović, Natalija, Čož-Rakovac, Rozelindra, Laclef, Sylvain, Šmuc, Tomislav, Jović, Ozren, Marković, Dean, Pavelić, Sandra Kraljević
Publicado 2021

A large-scale evaluation of computational protein function prediction

por Radivojac, Predrag, Clark, Wyatt T, Oron, Tal Ronnen, Schnoes, Alexandra M, Wittkop, Tobias, Sokolov, Artem, Graim, Kiley, Funk, Christopher, Verspoor, Karin, Ben-Hur, Asa, Pandey, Gaurav, Yunes, Jeffrey M, Talwalkar, Ameet S, Repo, Susanna, Souza, Michael L, Piovesan, Damiano, Casadio, Rita, Wang, Zheng, Cheng, Jianlin, Fang, Hai, Gough, Julian, Koskinen, Patrik, Törönen, Petri, Nokso-Koivisto, Jussi, Holm, Liisa, Cozzetto, Domenico, Buchan, Daniel W A, Bryson, Kevin, Jones, David T, Limaye, Bhakti, Inamdar, Harshal, Datta, Avik, Manjari, Sunitha K, Joshi, Rajendra, Chitale, Meghana, Kihara, Daisuke, Lisewski, Andreas M, Erdin, Serkan, Venner, Eric, Lichtarge, Olivier, Rentzsch, Robert, Yang, Haixuan, Romero, Alfonso E, Bhat, Prajwal, Paccanaro, Alberto, Hamp, Tobias, Kaßner, Rebecca, Seemayer, Stefan, Vicedo, Esmeralda, Schaefer, Christian, Achten, Dominik, Auer, Florian, Boehm, Ariane, Braun, Tatjana, Hecht, Maximilian, Heron, Mark, Hönigschmid, Peter, Hopf, Thomas A, Kaufmann, Stefanie, Kiening, Michael, Krompass, Denis, Landerer, Cedric, Mahlich, Yannick, Roos, Manfred, Björne, Jari, Salakoski, Tapio, Wong, Andrew, Shatkay, Hagit, Gatzmann, Fanny, Sommer, Ingolf, Wass, Mark N, Sternberg, Michael J E, Škunca, Nives, Supek, Fran, Bošnjak, Matko, Panov, Panče, Džeroski, Sašo, Šmuc, Tomislav, Kourmpetis, Yiannis A I, van Dijk, Aalt D J, Braak, Cajo J F ter, Zhou, Yuanpeng, Gong, Qingtian, Dong, Xinran, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Di Camillo, Barbara, Toppo, Stefano, Lan, Liang, Djuric, Nemanja, Guo, Yuhong, Vucetic, Slobodan, Bairoch, Amos, Linial, Michal, Babbitt, Patricia C, Brenner, Steven E, Orengo, Christine, Rost, Burkhard, Mooney, Sean D, Friedberg, Iddo
Publicado 2013

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

por Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R., Lee, Alexandra J., Kacsoh, Balint Z., Crocker, Alex W., Lewis, Kimberley A., Georghiou, George, Nguyen, Huy N., Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S., Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L., Freddolino, Peter L., Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M., Gemovic, Branislava, Perovic, Vladimir R., Davidović, Radoslav S., Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad R.K., Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C., Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A., Antczak, Magdalena, Fabris, Fabio, Wass, Mark N., Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E., Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J., Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W., Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T., Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L., Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B., Reeb, Jonas, Ritchie, David W., Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico, Falda, Marco, Berselli, Michele, Tosatto, Silvio C.E., Carraro, Marco, Piovesan, Damiano, Ur Rehman, Hafeez, Mao, Qizhong, Zhang, Shanshan, Vucetic, Slobodan, Black, Gage S., Jo, Dane, Suh, Erica, Dayton, Jonathan B., Larsen, Dallas J., Omdahl, Ashton R., McGuffin, Liam J., Brackenridge, Danielle A., Babbitt, Patricia C., Yunes, Jeffrey M., Fontana, Paolo, Zhang, Feng, Zhu, Shanfeng, You, Ronghui, Zhang, Zihan, Dai, Suyang, Yao, Shuwei, Tian, Weidong, Cao, Renzhi, Chandler, Caleb, Amezola, Miguel, Johnson, Devon, Chang, Jia-Ming, Liao, Wen-Hung, Liu, Yi-Wei, Pascarelli, Stefano, Frank, Yotam, Hoehndorf, Robert, Kulmanov, Maxat, Boudellioua, Imane, Politano, Gianfranco, Di Carlo, Stefano, Benso, Alfredo, Hakala, Kai, Ginter, Filip, Mehryary, Farrokh, Kaewphan, Suwisa, Björne, Jari, Moen, Hans, Tolvanen, Martti E.E., Salakoski, Tapio, Kihara, Daisuke, Jain, Aashish, Šmuc, Tomislav, Altenhoff, Adrian, Ben-Hur, Asa, Rost, Burkhard, Brenner, Steven E., Orengo, Christine A., Jeffery, Constance J., Bosco, Giovanni, Hogan, Deborah A., Martin, Maria J., O’Donovan, Claire, Mooney, Sean D., Greene, Casey S., Radivojac, Predrag, Friedberg, Iddo
Publicado 2019