Evaluation of genome scaffolding tools using pooled clone sequencing

por DAL, Elif, ALKAN, Can
Publicado 2018

Characterizing microsatellite polymorphisms using assembly-based and mapping-based tools

por DEMİR, Gülfem, ALKAN, Can
Publicado 2019

Polishing copy number variant calls on exome sequencing data via deep learning

por Özden, Furkan, Alkan, Can, Çiçek, A. Ercüment
Publicado 2022

Fast characterization of segmental duplication structure in multiple genome assemblies

por Išerić, Hamza, Alkan, Can, Hach, Faraz, Numanagić, Ibrahim
Publicado 2022

taveRNA: a web suite for RNA algorithms and applications

por Aksay, Cagri, Salari, Raheleh, Karakoc, Emre, Alkan, Can, Sahinalp, S. Cenk
Publicado 2007

Realizing the potential of blockchain technologies in genomics

por Ozercan, Halil Ibrahim, Ileri, Atalay Mert, Ayday, Erman, Alkan, Can
Publicado 2018

Hercules: a profile HMM-based hybrid error correction algorithm for long reads

por Firtina, Can, Bar-Joseph, Ziv, Alkan, Can, Cicek, A Ercument
Publicado 2018

CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data

por Söylev, Arda, Çokoglu, Sevim Seda, Koptekin, Dilek, Alkan, Can, Somel, Mehmet
Publicado 2022

Accelerating read mapping with FastHASH

por Xin, Hongyi, Lee, Donghyuk, Hormozdiari, Farhad, Yedkar, Samihan, Mutlu, Onur, Alkan, Can
Publicado 2013

Fast characterization of segmental duplications in genome assemblies

por Numanagić, Ibrahim, Gökkaya, Alim S, Zhang, Lillian, Berger, Bonnie, Alkan, Can, Hach, Faraz
Publicado 2018

Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data

por Alkan, Can, Ventura, Mario, Archidiacono, Nicoletta, Rocchi, Mariano, Sahinalp, S. Cenk, Eichler, Evan E
Publicado 2007

mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications

por Hach, Faraz, Sarrafi, Iman, Hormozdiari, Farhad, Alkan, Can, Eichler, Evan E., Sahinalp, S. Cenk
Publicado 2014

VALOR2: characterization of large-scale structural variants using linked-reads

por Karaoğlanoğlu, Fatih, Ricketts, Camir, Ebren, Ezgi, Rasekh, Marzieh Eslami, Hajirasouliha, Iman, Alkan, Can
Publicado 2020

Discovery and genotyping of novel sequence insertions in many sequenced individuals

por Kavak, Pınar, Lin, Yen-Yi, Numanagić, Ibrahim, Asghari, Hossein, Güngör, Tunga, Alkan, Can, Hach, Faraz
Publicado 2017

Manipulating multiple sequence alignments via MaM and WebMaM

por Alkan, Can, Tüzün, Eray, Buard, Jerome, Lethiec, Franck, Eichler, Evan E., Bailey, Jeffrey A., Sahinalp, S. Cenk
Publicado 2005

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

por Hormozdiari, Fereydoun, Hajirasouliha, Iman, Dao, Phuong, Hach, Faraz, Yorukoglu, Deniz, Alkan, Can, Eichler, Evan E., Sahinalp, S. Cenk
Publicado 2010

Determining the origin of synchronous multifocal bladder cancer by exome sequencing

por Acar, Ömer, Özkurt, Ezgi, Demir, Gulfem, Saraç, Hilal, Alkan, Can, Esen, Tarık, Somel, Mehmet, Lack, Nathan A.
Publicado 2015

Robustness of Massively Parallel Sequencing Platforms

por Kavak, Pınar, Yüksel, Bayram, Aksu, Soner, Kulekci, M. Oguzhan, Güngör, Tunga, Hach, Faraz, Şahinalp, S. Cenk, Alkan, Can, Sağıroğlu, Mahmut Şamil
Publicado 2015

Discovery of large genomic inversions using long range information

por Eslami Rasekh, Marzieh, Chiatante, Giorgia, Miroballo, Mattia, Tang, Joyce, Ventura, Mario, Amemiya, Chris T., Eichler, Evan E., Antonacci, Francesca, Alkan, Can
Publicado 2017

Identification of protein–protein interaction bridges for multiple sclerosis

por Yazıcı, Gözde, Kurt Vatandaslar, Burcu, Aydin Canturk, Ilknur, Aydinli, Fatmagul I, Arici Duz, Ozge, Karakoc, Emre, Kerman, Bilal E, Alkan, Can
Publicado 2023