GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis

por Araki, Hiromitsu, Knapp, Christoph, Tsai, Peter, Print, Cristin
Publicado 2012

Transcriptome dynamics during cholesterol-induced transdifferentiation of human coronary artery smooth muscle cells: A Gene Ontology-centric clustering approach

por Inoue, Kentaro, Araki, Hiromitsu, Miura, Fumihito, Ito, Takashi
Publicado 2021

The Transcriptional Targets of Mutant FOXL2 in Granulosa Cell Tumours

por Rosario, Roseanne, Araki, Hiromitsu, Print, Cristin G., Shelling, Andrew N.
Publicado 2012

Changepoint detection in base-resolution methylome data reveals a robust signature of methylated domain landscape

por Yokoyama, Takao, Miura, Fumihito, Araki, Hiromitsu, Okamura, Kohji, Ito, Takashi
Publicado 2015

Computational gene network analysis reveals TNF-induced angiogenesis

por Ogami, Kentaro, Yamaguchi, Rui, Imoto, Seiya, Tamada, Yoshinori, Araki, Hiromitsu, Print, Cristin, Miyano, Satoru
Publicado 2012

Highly efficient single-stranded DNA ligation technique improves low-input whole-genome bisulfite sequencing by post-bisulfite adaptor tagging

por Miura, Fumihito, Shibata, Yukiko, Miura, Miki, Sangatsuda, Yuhei, Hisano, Osamu, Araki, Hiromitsu, Ito, Takashi
Publicado 2019

Association of haptoglobin genetic polymorphism with overall survival in advanced castration-resistant prostate cancer patients with personalized peptide vaccination

por Komatsu, Nobukazu, Pang, Xiaoliang, Araki, Hiromitsu, Koda, Yoshiro, Soejima, Kimiko, Sasada, Tetsuro, Tashiro, Kosuke, Kuhara, Satoru, Itoh, Kyogo
Publicado 2013

Galanin plays an important role in cancer invasiveness and is associated with poor prognosis in stage II colorectal cancer

por NAGAYOSHI, KINUKO, UEKI, TAKASHI, TASHIRO, KOSUKE, MIZUUCHI, YUSUKE, MANABE, TATSUYA, ARAKI, HIROMITSU, ODA, YOSHINAO, KUHARA, SATORU, TANAKA, MASAO
Publicado 2015

Mapping of histone-binding sites in histone replacement-completed spermatozoa

por Yoshida, Keisuke, Muratani, Masafumi, Araki, Hiromitsu, Miura, Fumihito, Suzuki, Takehiro, Dohmae, Naoshi, Katou, Yuki, Shirahige, Katsuhiko, Ito, Takashi, Ishii, Shunsuke
Publicado 2018

MelanomaDB: A Web Tool for Integrative Analysis of Melanoma Genomic Information to Identify Disease-Associated Molecular Pathways

por Trevarton, Alexander J., Mann, Michael B., Knapp, Christoph, Araki, Hiromitsu, Wren, Jonathan D., Stones-Havas, Steven, Black, Michael A., Print, Cristin G.
Publicado 2013

Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous Transplantation

por Araki, Hiromitsu, Miura, Fumihito, Watanabe, Akira, Morinaga, Chikako, Kitaoka, Fumiyo, Kitano, Yuko, Sakai, Noriko, Shibata, Yumiko, Terada, Motoki, Goto, So, Yamanaka, Shinya, Takahashi, Masayo, Ito, Takashi
Publicado 2019

Cell Cycle Gene Networks Are Associated with Melanoma Prognosis

por Wang, Li, Hurley, Daniel G., Watkins, Wendy, Araki, Hiromitsu, Tamada, Yoshinori, Muthukaruppan, Anita, Ranjard, Louis, Derkac, Eliane, Imoto, Seiya, Miyano, Satoru, Crampin, Edmund J., Print, Cristin G.
Publicado 2012

Persistent epigenetic alterations in transcription factors after a sustained virological response in hepatocellular carcinoma

por Sugimachi, Keishi, Araki, Hiromitsu, Saito, Hideyuki, Masuda, Takaaki, Miura, Fumihito, Inoue, Kentaro, Shimagaki, Tomonari, Mano, Yohei, Iguchi, Tomohiro, Morita, Masaru, Toh, Yasushi, Yoshizumi, Tomoharu, Ito, Takashi, Mimori, Koshi
Publicado 2022

Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis

por Affara, Muna, Sanders, Debbie, Araki, Hiromitsu, Tamada, Yoshinori, Dunmore, Benjamin J, Humphreys, Sally, Imoto, Seiya, Savoie, Christopher, Miyano, Satoru, Kuhara, Satoru, Jeffries, David, Print, Cristin, Charnock-Jones, D Stephen
Publicado 2013

The AP-1 transcription factor JunB is required for Th17 cell differentiation

por Yamazaki, Soh, Tanaka, Yoshihiko, Araki, Hiromitsu, Kohda, Akira, Sanematsu, Fumiyuki, Arasaki, Tomoko, Duan, Xuefeng, Miura, Fumihito, Katagiri, Takaharu, Shindo, Ryodai, Nakano, Hiroyasu, Ito, Takashi, Fukui, Yoshinori, Endo, Shogo, Sumimoto, Hideki
Publicado 2017

TBIO-08. BASE-RESOLUTION METHYLOMES OF GLIOMAS BEARING HISTONE H3.3 MUTATIONS REVEAL A G34 MUTANT-SPECIFIC SIGNATURE SHARED WITH BONE TUMORS

por Sangatsuda, Yuhei, Miura, Fumihito, Araki, Hiromitsu, Mizuguchi, Masahiro, Hata, Nobuhiro, Kuga, Daisuke, Hatae, Ryusuke, Akagi, Yojiro, Amemiya, Takeo, Fujioka, Yutaka, Arai, Yasuhito, Shibata, Tatsuhiro, Yoshimoto, Koji, Ito, Takashi, Iihara, Koji
Publicado 2020

Base-resolution methylomes of gliomas bearing histone H3.3 mutations reveal a G34 mutant-specific signature shared with bone tumors

por Sangatsuda, Yuhei, Miura, Fumihito, Araki, Hiromitsu, Mizoguchi, Masahiro, Hata, Nobuhiro, Kuga, Daisuke, Hatae, Ryusuke, Akagi, Yojiro, Amemiya, Takeo, Fujioka, Yutaka, Arai, Yasuhito, Yoshida, Akihiko, Shibata, Tatsuhiro, Yoshimoto, Koji, Iihara, Koji, Ito, Takashi
Publicado 2020

Hoxa10 mediates positional memory to govern stem cell function in adult skeletal muscle

por Yoshioka, Kiyoshi, Nagahisa, Hiroshi, Miura, Fumihito, Araki, Hiromitsu, Kamei, Yasutomi, Kitajima, Yasuo, Seko, Daiki, Nogami, Jumpei, Tsuchiya, Yoshifumi, Okazaki, Narihiro, Yonekura, Akihiko, Ohba, Seigo, Sumita, Yoshinori, Chiba, Ko, Ito, Kosei, Asahina, Izumi, Ogawa, Yoshihiro, Ito, Takashi, Ohkawa, Yasuyuki, Ono, Yusuke
Publicado 2021

Gene network inference and visualization tools for biologists: application to new human transcriptome datasets

por Hurley, Daniel, Araki, Hiromitsu, Tamada, Yoshinori, Dunmore, Ben, Sanders, Deborah, Humphreys, Sally, Affara, Muna, Imoto, Seiya, Yasuda, Kaori, Tomiyasu, Yuki, Tashiro, Kosuke, Savoie, Christopher, Cho, Vicky, Smith, Stephen, Kuhara, Satoru, Miyano, Satoru, Charnock-Jones, D. Stephen, Crampin, Edmund J., Print, Cristin G.
Publicado 2012

DNA hypomethylation characterizes genes encoding tissue-dominant functional proteins in liver and skeletal muscle

por Maehara, Hideki, Kokaji, Toshiya, Hatano, Atsushi, Suzuki, Yutaka, Matsumoto, Masaki, Nakayama, Keiichi I., Egami, Riku, Tsuchiya, Takaho, Ozaki, Haruka, Morita, Keigo, Shirai, Masaki, Li, Dongzi, Terakawa, Akira, Uematsu, Saori, Hironaka, Ken-ichi, Ohno, Satoshi, Kubota, Hiroyuki, Araki, Hiromitsu, Miura, Fumihito, Ito, Takashi, Kuroda, Shinya
Publicado 2023