AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision

por Abyzov, Alexej, Gerstein, Mark
Publicado 2011

Elevated variant density around SV breakpoints in germline lineage lends support to error-prone replication hypothesis

por Dhokarh, Dhananjay, Abyzov, Alexej
Publicado 2016

Chromatin organization modulates the origin of heritable structural variations in human genome

por Roychowdhury, Tanmoy, Abyzov, Alexej
Publicado 2019

LongAGE: defining breakpoints of genomic structural variants through optimal and memory efficient alignments of long reads

por Tran, Quang, Abyzov, Alexej
Publicado 2020

A comprehensive analysis of non-sequential alignments between all protein structures

por Abyzov, Alexej, Ilyin, Valentin A
Publicado 2007

Understanding genome structural variations

por Abyzov, Alexej, Li, Shantao, Gerstein, Mark B.
Publicado 2015

TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method

por Leslin, Chesley M., Abyzov, Alexej, Ilyin, Valentin A.
Publicado 2007

Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans

por Haraksingh, Rajini R., Abyzov, Alexej, Urban, Alexander Eckehart
Publicado 2017

Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways

por Uzun, Alper, Leslin, Chesley M., Abyzov, Alexej, Ilyin, Valentin
Publicado 2007

Landscape and variation of novel retroduplications in 26 human populations

por Zhang, Yan, Li, Shantao, Abyzov, Alexej, Gerstein, Mark B.
Publicado 2017

Somatic genomic mosaicism in the brain during aging: Scratching the surface

por Bae, Taejeong, Wang, Yifan, Vaccarino, Flora M, Abyzov, Alexej
Publicado 2022

An AP Endonuclease 1–DNA Polymerase β Complex: Theoretical Prediction of Interacting Surfaces

por Abyzov, Alexej, Uzun, Alper, Strauss, Phyllis R., Ilyin, Valentin A.
Publicado 2008

CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing

por Suvakov, Milovan, Panda, Arijit, Diesh, Colin, Holmes, Ian, Abyzov, Alexej
Publicado 2021

Genome-Wide Mapping of Copy Number Variation in Humans: Comparative Analysis of High Resolution Array Platforms

por Haraksingh, Rajini R., Abyzov, Alexej, Gerstein, Mark, Urban, Alexander E., Snyder, Michael
Publicado 2011

SCELLECTOR: ranking amplification bias in single cells using shallow sequencing

por Sarangi, Vivekananda, Jourdon, Alexandre, Bae, Taejeong, Panda, Arijit, Vaccarino, Flora, Abyzov, Alexej
Publicado 2020

Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets

por Bhardwaj, Nitin, Carson, Matthew B., Abyzov, Alexej, Yan, Koon-Kiu, Lu, Hui, Gerstein, Mark B.
Publicado 2010

Inferring modes of evolution from colorectal cancer with residual polyp of origin

por Kim, Minsoo, Druliner, Brooke R., Vasmatzis, Nikolaos, Bae, Taejeong, Chia, Nicholas, Abyzov, Alexej, Boardman, Lisa A.
Publicado 2017

PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

por Korbel, Jan O, Abyzov, Alexej, Mu, Xinmeng Jasmine, Carriero, Nicholas, Cayting, Philip, Zhang, Zhengdong, Snyder, Michael, Gerstein, Mark B
Publicado 2009

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

por Abyzov, Alexej, Iskow, Rebecca, Gokcumen, Omer, Radke, David W., Balasubramanian, Suganthi, Pei, Baikang, Habegger, Lukas, Lee, Charles, Gerstein, Mark
Publicado 2013

A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

por Chen, Jieming, Rozowsky, Joel, Galeev, Timur R., Harmanci, Arif, Kitchen, Robert, Bedford, Jason, Abyzov, Alexej, Kong, Yong, Regan, Lynne, Gerstein, Mark
Publicado 2016