Technological considerations for genome-guided diagnosis and management of cancer

por Lennon, Niall J., Adalsteinsson, Viktor A., Gabriel, Stacey B.
Publicado 2016

NGS-based identification and tracing of microsatellite instability from minute amounts DNA using inter-Alu-PCR

por Yu, Fangyan, Leong, Ka Wai, Makrigiorgos, Alexander, Adalsteinsson, Viktor A, Ladas, Ioannis, Ng, Kimmie, Mamon, Harvey, Makrigiorgos, G Mike
Publicado 2020

A nuclease-polymerase chain reaction enables amplification of probes used for capture-based DNA target enrichment

por Leong, Ka Wai, Yu, Fangyan, Adalsteinsson, Viktor A, Reed, Sarah, Gydush, Gregory, Ladas, Ioannis, Li, Jiang, Tantisira, Kelan G, Makrigiorgos, Gerassimos Mike
Publicado 2019

Duplex-Repair enables highly accurate sequencing, despite DNA damage

por Xiong, Kan, Shea, Douglas, Rhoades, Justin, Blewett, Timothy, Liu, Ruolin, Bae, Jin H, Nguyen, Erica, Makrigiorgos, G Mike, Golub, Todd R, Adalsteinsson, Viktor A
Publicado 2021

Association of 17q22 Amplicon Via Cell-Free DNA With Platinum Chemotherapy Response in Metastatic Triple-Negative Breast Cancer

por Collier, Katharine A., Asad, Sarah, Tallman, David, Jenison, Janet, Rajkovic, Andrei, Mardis, Elaine R., Parsons, Heather A., Tolaney, Sara M., Winer, Eric P., Lin, Nancy U., Ha, Gavin, Adalsteinsson, Viktor A., Stover, Daniel G.
Publicado 2021

Circulating Cell-Free DNA as Biomarker of Taxane Resistance in Metastatic Castration-Resistant Prostate Cancer

por Francini, Edoardo, Ou, Fang-Shu, Rhoades, Justin, Wolfe, Eric G., O’Connor, Edward P., Ha, Gavin, Gydush, Gregory, Kelleher, Kaitlin M., Bhatt, Rupal S., Balk, Steven P., Sweeney, Christopher J., Adalsteinsson, Viktor A., Taplin, Mary-Ellen, Choudhury, Atish D.
Publicado 2021

Modeling clonal structure over narrow time frames via circulating tumor DNA in metastatic breast cancer

por Weber, Zachary T., Collier, Katharine A., Tallman, David, Forman, Juliet, Shukla, Sachet, Asad, Sarah, Rhoades, Justin, Freeman, Samuel, Parsons, Heather A., Williams, Nicole O., Barroso-Sousa, Romualdo, Stover, Elizabeth H., Mahdi, Haider, Cibulskis, Carrie, Lennon, Niall J., Ha, Gavin, Adalsteinsson, Viktor A., Tolaney, Sara M., Stover, Daniel G.
Publicado 2021

Massively-parallel enrichment of minor alleles for mutational testing via low-depth duplex sequencing

por Gydush, Gregory, Nguyen, Erica, Bae, Jin H., Blewett, Timothy, Rhoades, Justin, Reed, Sarah C., Shea, Douglas, Xiong, Kan, Liu, Ruolin, Yu, Fangyan, Leong, Ka Wai, Choudhury, Atish D., Stover, Daniel G., Tolaney, Sara M., Krop, Ian E., Love, J. Christopher, Parsons, Heather A., Makrigiorgos, G. Mike, Golub, Todd R., Adalsteinsson, Viktor A.
Publicado 2022

A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA

por Doebley, Anna-Lisa, Ko, Minjeong, Liao, Hanna, Cruikshank, A. Eden, Santos, Katheryn, Kikawa, Caroline, Hiatt, Joseph B., Patton, Robert D., De Sarkar, Navonil, Collier, Katharine A., Hoge, Anna C. H., Chen, Katharine, Zimmer, Anat, Weber, Zachary T., Adil, Mohamed, Reichel, Jonathan B., Polak, Paz, Adalsteinsson, Viktor A., Nelson, Peter S., MacPherson, David, Parsons, Heather A., Stover, Daniel G., Ha, Gavin
Publicado 2022

Author Correction: A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA

por Doebley, Anna-Lisa, Ko, Minjeong, Liao, Hanna, Cruikshank, A. Eden, Santos, Katheryn, Kikawa, Caroline, Hiatt, Joseph B., Patton, Robert D., De Sarkar, Navonil, Collier, Katharine A., Hoge, Anna C. H., Chen, Katharine, Zimmer, Anat, Weber, Zachary T., Adil, Mohamed, Reichel, Jonathan B., Polak, Paz, Adalsteinsson, Viktor A., Nelson, Peter S., MacPherson, David, Parsons, Heather A., Stover, Daniel G., Ha, Gavin
Publicado 2023

Single duplex DNA sequencing with CODEC detects mutations with high sensitivity

por Bae, Jin H., Liu, Ruolin, Roberts, Eugenia, Nguyen, Erica, Tabrizi, Shervin, Rhoades, Justin, Blewett, Timothy, Xiong, Kan, Gydush, Gregory, Shea, Douglas, An, Zhenyi, Patel, Sahil, Cheng, Ju, Sridhar, Sainetra, Liu, Mei Hong, Lassen, Emilie, Skytte, Anne-Bine, Grońska-Pęski, Marta, Shoag, Jonathan E., Evrony, Gilad D., Parsons, Heather A., Mayer, Erica L., Makrigiorgos, G. Mike, Golub, Todd R., Adalsteinsson, Viktor A.
Publicado 2023

The Mutational Landscape of Circulating Tumor Cells in Multiple Myeloma

por Mishima, Yuji, Paiva, Bruno, Shi, Jiantao, Park, Jihye, Manier, Salomon, Takagi, Satoshi, Massoud, Mira, Perilla-Glen, Adriana, Aljawai, Yosra, Huynh, Daisy, Roccaro, Aldo M., Sacco, Antonio, Capelletti, Marzia, Detappe, Alexandre, Alignani, Diego, Anderson, Kenneth C., Munshi, Nikhil C., Prosper, Felipe, Lohr, Jens G., Ha, Gavin, Freeman, Samuel S., Van Allen, Eliezer M., Adalsteinsson, Viktor A., Michor, Franziska, San Miguel, Jesus F., Ghobrial, Irene M.
Publicado 2017

Detection of Leptomeningeal Disease Using Cell-Free DNA From Cerebrospinal Fluid

por White, Michael D., Klein, Robert H., Shaw, Brian, Kim, Albert, Subramanian, Megha, Mora, Joana L., Giobbie-Hurder, Anita, Nagabhushan, Deepika, Jain, Aarushi, Singh, Mohini, Kuter, Benjamin M., Nayyar, Naema, Bertalan, Mia S., Stocking, Jackson H., Markson, Samuel C., Lastrapes, Matthew, Alvarez-Breckenridge, Christopher, Cahill, Daniel P., Gydush, Gregory, Rhoades, Justin, Rotem, Denisse, Adalsteinsson, Viktor A., Mahar, Maura, Kaplan, Alexander, Oh, Kevin, Sullivan, Ryan J., Gerstner, Elizabeth, Carter, Scott L., Brastianos, Priscilla K.
Publicado 2021

Circulating tumor DNA association with residual cancer burden after neoadjuvant chemotherapy in triple-negative breast cancer in TBCRC 030

por Parsons, Heather A., Blewett, Timothy, Chu, Xiangying, Sridhar, Sainetra, Santos, Katheryn, Xiong, Kan, Abramson, Vandana G., Patel, Ashka, Cheng, Ju, Brufsky, Adam, Rhoades, Justin, Force, Jeremy, Liu, Ruolin, Traina, Tiffany A., Carey, Lisa A., Rimawi, Mothaffar F., Miller, Kathy D., Stearns, Vered, Specht, Jennifer, Falkson, Carla, Burstein, Harold J., Wolff, Antonio C., Winer, Eric P., Tayob, Nabihah, Krop, Ian E., Makrigiorgos, G. Mike, Golub, Todd R., Mayer, Erica L., Adalsteinsson, Viktor A.
Publicado 2023

Genomic and transcriptomic correlates of immunotherapy response within the tumor microenvironment of leptomeningeal metastases

por Prakadan, Sanjay M., Alvarez-Breckenridge, Christopher A., Markson, Samuel C., Kim, Albert E., Klein, Robert H., Nayyar, Naema, Navia, Andrew W., Kuter, Benjamin M., Kolb, Kellie E., Bihun, Ivanna, Mora, Joana L., Bertalan, Mia Solana, Shaw, Brian, White, Michael, Kaplan, Alexander, Stocking, Jackson H., Wadsworth, Marc H., Lee, Eudocia Q., Chukwueke, Ugonma, Wang, Nancy, Subramanian, Megha, Rotem, Denisse, Cahill, Daniel P., Adalsteinsson, Viktor A., Miller, Jeffrey W., Sullivan, Ryan J., Carter, Scott L., Brastianos, Priscilla K., Shalek, Alex K.
Publicado 2021

Author Correction: Genomic and transcriptomic correlates of immunotherapy response within the tumor microenvironment of leptomeningeal metastases

por Prakadan, Sanjay M., Alvarez-Breckenridge, Christopher A., Markson, Samuel C., Kim, Albert E., Klein, Robert H., Nayyar, Naema, Navia, Andrew W., Kuter, Benjamin M., Kolb, Kellie E., Bihun, Ivanna, Mora, Joana L., Bertalan, Mia Solana, Shaw, Brian, White, Michael, Kaplan, Alexander, Stocking, Jackson H., Wadsworth, Marc H., Lee, Eudocia Q., Chukwueke, Ugonma, Wang, Nancy, Subramanian, Megha, Rotem, Denisse, Cahill, Daniel P., Adalsteinsson, Viktor A., Miller, Jeffrey W., Sullivan, Ryan J., Carter, Scott L., Brastianos, Priscilla K., Shalek, Alex K.
Publicado 2021

Whole exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer

por Lohr, Jens G., Adalsteinsson, Viktor A., Cibulskis, Kristian, Choudhury, Atish D., Rosenberg, Mara, Cruz-Gordillo, Peter, Francis, Joshua, Zhang, Cheng-Zhong, Shalek, Alex K., Satija, Rahul, Trombetta, John T., Lu, Diana, Tallapragada, Naren, Tahirova, Narmin, Kim, Sora, Blumenstiel, Brendan, Sougnez, Carrie, Lowe, Alarice, Wong, Bang, Auclair, Daniel, Van Allen, Eliezer M., Nakabayashi, Mari, Lis, Rosina T., Lee, Gwo-Shu M., Li, Tiantian, Chabot, Matthew S., Ly, Amy, Taplin, Mary-Ellen, Clancy, Thomas E., Loda, Massimo, Regev, Aviv, Meyerson, Matthew, Hahn, William C., Kantoff, Philip W., Golub, Todd R., Getz, Gad, Boehm, Jesse S., Love, J. Christopher
Publicado 2014

Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers

por Parikh, Aparna R., Leshchiner, Ignaty, Elagina, Liudmila, Goyal, Lipika, Levovitz, Chaya, Siravegna, Giulia, Livitz, Dimitri, Rhrissorrakrai, Kahn, Martin, Elizabeth E., Van Seventer, Emily E., Hanna, Megan, Slowik, Kara, Utro, Filippo, Pinto, Christopher J., Wong, Alicia, Danysh, Brian P., de la Cruz, Ferran Fece, Fetter, Isobel J., Nadres, Brandon, Shahzade, Heather A., Allen, Jill N., Blaszkowsky, Lawrence S., Clark, Jeffrey W., Giantonio, Bruce, Murphy, Janet E., Nipp, Ryan D., Roeland, Eric, Ryan, David P., Weekes, Colin D., Kwak, Eunice L., Faris, Jason E., Wo, Jennifer Y., Aguet, François, Dey-Guha, Ipsita, Hazar-Rethinam, Mehlika, Dias-Santagata, Dora, Ting, David T., Zhu, Andrew X., Hong, Theodore S., Golub, Todd R., Iafrate, A. John, Adalsteinsson, Viktor A., Bardelli, Alberto, Parida, Laxmi, Juric, Dejan, Getz, Gad, Corcoran, Ryan B.
Publicado 2019

Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors

por Adalsteinsson, Viktor A., Ha, Gavin, Freeman, Samuel S., Choudhury, Atish D., Stover, Daniel G., Parsons, Heather A., Gydush, Gregory, Reed, Sarah C., Rotem, Denisse, Rhoades, Justin, Loginov, Denis, Livitz, Dimitri, Rosebrock, Daniel, Leshchiner, Ignaty, Kim, Jaegil, Stewart, Chip, Rosenberg, Mara, Francis, Joshua M., Zhang, Cheng-Zhong, Cohen, Ofir, Oh, Coyin, Ding, Huiming, Polak, Paz, Lloyd, Max, Mahmud, Sairah, Helvie, Karla, Merrill, Margaret S., Santiago, Rebecca A., O’Connor, Edward P., Jeong, Seong H., Leeson, Rachel, Barry, Rachel M., Kramkowski, Joseph F., Zhang, Zhenwei, Polacek, Laura, Lohr, Jens G., Schleicher, Molly, Lipscomb, Emily, Saltzman, Andrea, Oliver, Nelly M., Marini, Lori, Waks, Adrienne G., Harshman, Lauren C., Tolaney, Sara M., Van Allen, Eliezer M., Winer, Eric P., Lin, Nancy U., Nakabayashi, Mari, Taplin, Mary-Ellen, Johannessen, Cory M., Garraway, Levi A., Golub, Todd R., Boehm, Jesse S., Wagle, Nikhil, Getz, Gad, Love, J. Christopher, Meyerson, Matthew
Publicado 2017