985. Pooled RNA Metagenomics to Enable Scalable, Unbiased Pathogen Detection and Surveillance

por Messer, Katelyn S, Adams, Gordon, Paull, Jillian S, Livny, Jonathan, Lemieux, Jacob, Park, Daniel J, Sabeti, Pardis C, Siddle, Katherine J
Publicado 2023

Development of Cas13a-based Assays for Neisseria gonorrhoeae Detection and Gyrase A Determination

por Allan-Blitz, Lao-Tzu, Shah, Palak, Adams, Gordon, Branda, John A., Klausner, Jeffrey D., Goldstein, Robert, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2023

Development of Cas13a-based assays for Neisseria gonorrhoeae detection and gyrase A determination

por Allan-Blitz, Lao-Tzu, Shah, Palak, Adams, Gordon, Branda, John A., Klausner, Jeffrey D., Goldstein, Robert, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2023

Neuropathological Features of Covid-19

por Solomon, Isaac H., Normandin, Erica, Bhattacharyya, Shamik, Mukerji, Shibani S., Keller, Kiana, Ali, Ahya S., Adams, Gordon, Hornick, Jason L., Padera, Robert F., Sabeti, Pardis
Publicado 2020

Babesia microti Variant With Multiple Resistance Mutations Detected in an Immunocompromised Patient Receiving Atovaquone Prophylaxis

por Holbrook, Nolan R, Klontz, Erik H, Adams, Gordon C, Schnittman, Samuel R, Issa, Nicolas C, Bond, Sheila A, Branda, John A, Lemieux, Jacob E
Publicado 2023

A53 Systematic application of metagenomics NGS to identify and sequence viral pathogens in infections of the central nervous system

por Piantadosi, Anne, Mukerji, Shibani, Ye, Simon, Lemieux, Jacob, Friemark, Lisa, Park, Daniel, Adams, Gordon, Leone, Michael, Goldberg, Marcia, Cho, Tracey, Rosenberg, Eric, Sabeti, Pardis
Publicado 2018

Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques

por Santus, Luisa, Sopena-Rios, Maria, García-Pérez, Raquel, Lin, Aaron E., Adams, Gordon C., Barnes, Kayla G., Siddle, Katherine J., Wohl, Shirlee, Reverter, Ferran, Rinn, John L., Bennett, Richard S., Hensley, Lisa E., Sabeti, Pardis C., Melé, Marta
Publicado 2023

868. Prospective Pathogen Detection in Patients With Central Nervous System Inflammation Using Metagenomic Sequencing

por Piantadosi, Anne, Mukerji, Shibani, Ye, Simon, Leone, Michael, Freimark, Lisa, Lemieux, Jacob, Solomon, Isaac, Ahmed, Asim, Kanjilal, Sanjat, Goldstein, Robert, Ganesh, Vijay, Ostrem, Bridget, Thon, Jesse, Kinsella, Cormac, Adams, Gordon, Rosenberg, Eric, Goldberg, Marcia, Sabeti, Pardis, Cho, Tracey
Publicado 2018

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

por Lagerborg, Kim A., Normandin, Erica, Bauer, Matthew R., Adams, Gordon, Figueroa, Katherine, Loreth, Christine, Gladden-Young, Adrianne, Shaw, Bennett, Pearlman, Leah, Shenoy, Erica S., Hooper, David, Pierce, Virginia M., Zachary, Kimon C., Park, Daniel J., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Reilly, Steven K, Siddle, Katherine J.
Publicado 2021

Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients

por Normandin, Erica, Holroyd, Kathryn B., Collens, Sarah I., Shaw, Bennett M., Siddle, Katherine J., Adams, Gordon, Rudy, Melissa, Solomon, Isaac H., Anahtar, Melis N., Lemieux, Jacob E., Trombetta, Bianca A., Kivisakk, Pia, Arnold, Steven E., Rapalino, Otto, Piantadosi, Anne L., Sen, Pritha, Rosenberg, Eric S., Branda, John, Sabeti, Pardis C., Mukerji, Shibani S.
Publicado 2021

Rapid Detection of Powassan Virus in a Patient With Encephalitis by Metagenomic Sequencing

por Piantadosi, Anne, Kanjilal, Sanjat, Ganesh, Vijay, Khanna, Arjun, Hyle, Emily P, Rosand, Jonathan, Bold, Tyler, Metsky, Hayden C, Lemieux, Jacob, Leone, Michael J, Freimark, Lisa, Matranga, Christian B, Adams, Gordon, McGrath, Graham, Zamirpour, Siavash, Telford, Sam, Rosenberg, Eric, Cho, Tracey, Frosch, Matthew P, Goldberg, Marcia B, Mukerji, Shibani S, Sabeti, Pardis C
Publicado 2018

The 2022 RSV surge was driven by multiple viral lineages

por Adams, Gordon, Moreno, Gage K., Petros, Brittany A., Uddin, Rockib, Levine, Zoe, Kotzen, Ben, Messer, Katelyn, Dobbins, Sabrina T., DeRuff, Katherine C., Loreth, Christine, Brock-Fisher, Taylor, Schaffner, Stephen F., Chaluvadi, Sushma, Kanjilal, Sanjat, Luban, Jeremy, Ozonoff, Al, Park, Daniel, Turbett, Sarah, Siddle, Katherine J., MacInnis, Bronwyn L., Sabeti, Pardis, Lemieux, Jacob
Publicado 2023

RSV Surge in the USA and Viral Lineages, 2022

por Adams, Gordon, Moreno, Gage K., Petros, Brittany A., Uddin, Rockib, Levine, Zoe, Kotzen, Ben, Messer, Katelyn, Dobbins, Sabrina T., DeRuff, Katherine C., Loreth, Christine, Brock-Fisher, Taylor, Schaffner, Stephen F., Chaluvadi, Sushma, Kanjilal, Sanjat, Luban, Jeremy, Ozonoff, Al, Park, Daniel, Turbett, Sarah, Siddle, Katie J., MacInnis, Bronwyn L., Sabeti, Pardis, Lemieux, Jacob E.
Publicado 2023

Integrated sample inactivation, amplification, and Cas13-based detection of SARS-CoV-2

por Arizti-Sanz, Jon, Freije, Catherine A., Stanton, Alexandra C., Boehm, Chloe K., Petros, Brittany A., Siddiqui, Sameed, Shaw, Bennett M., Adams, Gordon, Kosoko-Thoroddsen, Tinna-Solveig F., Kemball, Molly E., Gross, Robin, Wronka, Loni, Caviness, Katie, Hensley, Lisa E., Bergman, Nicholas H., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Myhrvold, Cameron
Publicado 2020

Enhanced Virus Detection and Metagenomic Sequencing in Patients with Meningitis and Encephalitis

por Piantadosi, Anne, Mukerji, Shibani S., Ye, Simon, Leone, Michael J., Freimark, Lisa M., Park, Daniel, Adams, Gordon, Lemieux, Jacob, Kanjilal, Sanjat, Solomon, Isaac H., Ahmed, Asim A., Goldstein, Robert, Ganesh, Vijay, Ostrem, Bridget, Cummins, Kaelyn C., Thon, Jesse M., Kinsella, Cormac M., Rosenberg, Eric, Frosch, Matthew P., Goldberg, Marcia B., Cho, Tracey A., Sabeti, Pardis
Publicado 2021

Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2

por Arizti-Sanz, Jon, Freije, Catherine A., Stanton, Alexandra C., Petros, Brittany A., Boehm, Chloe K., Siddiqui, Sameed, Shaw, Bennett M., Adams, Gordon, Kosoko-Thoroddsen, Tinna-Solveig F., Kemball, Molly E., Uwanibe, Jessica N., Ajogbasile, Fehintola V., Eromon, Philomena E., Gross, Robin, Wronka, Loni, Caviness, Katie, Hensley, Lisa E., Bergman, Nicholas H., MacInnis, Bronwyn L., Happi, Christian T., Lemieux, Jacob E., Sabeti, Pardis C., Myhrvold, Cameron
Publicado 2020

Distinguishing Severe Acute Respiratory Syndrome Coronavirus 2 Persistence and Reinfection: A Retrospective Cohort Study

por Turbett, Sarah E, Tomkins-Tinch, Christopher H, Anahtar, Melis N, Dugdale, Caitlin M, Hyle, Emily P, Shenoy, Erica S, Shaw, Bennett, Egbuonu, Kenechukwu, Bowman, Kathryn A, Zachary, Kimon C, Adams, Gordon C, Hooper, David C, Ryan, Edward T, LaRocque, Regina C, Bassett, Ingrid V, Triant, Virginia A, Siddle, Katherine J, Rosenberg, Eric, Sabeti, Pardis C, Schaffner, Stephen F, MacInnis, Bronwyn L, Lemieux, Jacob E, Charles, Richelle C
Publicado 2022

Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics

por Kotliar, Dylan, Lin, Aaron E., Logue, James, Hughes, Travis K., Khoury, Nadine M., Raju, Siddharth S., Wadsworth, Marc H., Chen, Han, Kurtz, Jonathan R., Dighero-Kemp, Bonnie, Bjornson, Zach B., Mukherjee, Nilanjan, Sellers, Brian A., Tran, Nancy, Bauer, Matthew R., Adams, Gordon C., Adams, Ricky, Rinn, John L., Melé, Marta, Schaffner, Stephen F., Nolan, Garry P., Barnes, Kayla G., Hensley, Lisa E., McIlwain, David R., Shalek, Alex K., Sabeti, Pardis C., Bennett, Richard S.
Publicado 2020

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay

por Anahtar, Melis N., Shaw, Bennett, Slater, Damien, Byrne, Elizabeth, Botti-Lodovico, Yolanda, Adams, Gordon, Schaffner, Stephen, Eversley, Jacqueline, McGrath, Graham, Gogakos, Tasos, Lennerz, Jochen, Desai Marble, Hetal, Ritterhouse, Lauren L., Batten, Julie, Georgantas, N. Zeke, Pellerin, Rebecca, Signorelli, Sylvia, Thierauf, Julia, Kemball, Molly, Happi, Christian, Grant, Donald S., Ndiaye, Daouda, Siddle, Katherine J., Mehta, Samar B., Harris, Jason, Ryan, Edward T., Pierce, Virginia, LaRocque, Regina, Lemieux, Jacob E., Sabeti, Pardis, Rosenberg, Eric, Branda, John, Turbett, Sarah E.
Publicado 2020

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: a guide and case study in setting up an emergency-use, laboratory-developed molecular microbiol...

por Anahtar, Melis N, Shaw, Bennett M, Slater, Damien, Byrne, Elizabeth H, Botti-Lodovico, Yolanda, Adams, Gordon, Schaffner, Stephen F, Eversley, Jacqueline, McGrath, Graham E G, Gogakos, Tasos, Lennerz, Jochen, Marble, Hetal Desai, Ritterhouse, Lauren L, Batten, Julie M, Georgantas, N Zeke, Pellerin, Rebecca, Signorelli, Sylvia, Thierauf, Julia, Kemball, Molly, Happi, Christian, Grant, Donald S, Ndiaye, Daouda, Siddle, Katherine J, Mehta, Samar B, Harris, Jason B, Ryan, Edward T, Pierce, Virginia M, LaRocque, Regina C, Lemieux, Jacob E, Sabeti, Pardis C, Rosenberg, Eric S, Branda, John A, Turbett, Sarah E
Publicado 2021