A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data

por Li, Hongyu, Zhu, Biqing, Xu, Zhichao, Adams, Taylor, Kaminski, Naftali, Zhao, Hongyu
Publicado 2021

Exploring the Use of Educational Material About Shoulder Dysfunction: A Quality Improvement Project in People With Amyotrophic Lateral Sclerosis

por Burke, Katherine, Ellrodt, Amy Swartz, Levine, Jason, Adams, Taylor, Allis, Rebecca, Macmurdie, Ian, Paganoni, Sabrina
Publicado 2018

Spatial monitoring technologies for coupling the soil plant water animal nexus

por Ashworth, Amanda J., Kharel, Tulsi, Sauer, Tom, Adams, Taylor C., Philipp, Dirk, Thomas, Andrew L., Owens, Phillip R.
Publicado 2022

CINS: Cell Interaction Network inference from Single cell expression data

por Yuan, Ye, Cosme, Carlos, Adams, Taylor Sterling, Schupp, Jonas, Sakamoto, Koji, Xylourgidis, Nikos, Ruffalo, Matthew, Li, Jiachen, Kaminski, Naftali, Bar-Joseph, Ziv
Publicado 2022

Emergence of division of labor in tissues through cell interactions and spatial cues

por Adler, Miri, Moriel, Noa, Goeva, Aleksandrina, Avraham-Davidi, Inbal, Mages, Simon, Adams, Taylor S., Kaminski, Naftali, Macosko, Evan Z., Regev, Aviv, Medzhitov, Ruslan, Nitzan, Mor
Publicado 2023

Long noncoding RNA TINCR is a novel regulator of human bronchial epithelial cell differentiation state

por Omote, Norihito, Sakamoto, Koji, Li, Qin, Schupp, Jonas C., Adams, Taylor, Ahangari, Farida, Chioccioli, Maurizio, DeIuliis, Giuseppe, Hashimoto, Naozumi, Hasegawa, Yoshinori, Kaminski, Naftali
Publicado 2021

iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects

por Liu, Yunqing, Zhao, Jiayi, Adams, Taylor S., Wang, Ningya, Schupp, Jonas C., Wu, Weimiao, McDonough, John E., Chupp, Geoffrey L., Kaminski, Naftali, Wang, Zuoheng, Yan, Xiting
Publicado 2023

Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects

por Liu, Yunqing, Zhao, Jiayi, Adams, Taylor S., Wang, Ningya, Schupp, Jonas C., Wu, Weimiao, McDonough, John E., Chupp, Geoffrey L., Kaminski, Naftali, Wang, Zuoheng, Yan, Xiting
Publicado 2023

Platform Effects on Regeneration by Pulmonary Basal Cells as Evaluated by Single-Cell RNA Sequencing

por Greaney, Allison M., Adams, Taylor S., Brickman Raredon, Micha Sam, Gubbins, Elise, Schupp, Jonas C., Engler, Alexander J., Ghaedi, Mahboobe, Yuan, Yifan, Kaminski, Naftali, Niklason, Laura E.
Publicado 2020

Microenvironmental sensing by fibroblasts controls macrophage population size

por Zhou, Xu, Franklin, Ruth A., Adler, Miri, Carter, Trevor S., Condiff, Emily, Adams, Taylor S., Pope, Scott D., Philip, Naomi H., Meizlish, Matthew L., Kaminski, Naftali, Medzhitov, Ruslan
Publicado 2022

Distinct roles of KLF4 in mesenchymal cell subtypes during lung fibrogenesis

por Chandran, Rachana R., Xie, Yi, Gallardo-Vara, Eunate, Adams, Taylor, Garcia-Milian, Rolando, Kabir, Inamul, Sheikh, Abdul Q., Kaminski, Naftali, Martin, Kathleen A., Herzog, Erica L., Greif, Daniel M.
Publicado 2021

Rational engineering of lung alveolar epithelium

por Leiby, Katherine L., Yuan, Yifan, Ng, Ronald, Raredon, Micha Sam Brickman, Adams, Taylor S., Baevova, Pavlina, Greaney, Allison M., Hirschi, Karen K., Campbell, Stuart G., Kaminski, Naftali, Herzog, Erica L., Niklason, Laura E.
Publicado 2023

Computation and visualization of cell–cell signaling topologies in single-cell systems data using Connectome

por Raredon, Micha Sam Brickman, Yang, Junchen, Garritano, James, Wang, Meng, Kushnir, Dan, Schupp, Jonas Christian, Adams, Taylor S., Greaney, Allison M., Leiby, Katherine L., Kaminski, Naftali, Kluger, Yuval, Levchenko, Andre, Niklason, Laura E.
Publicado 2022

Single-cell characterization of a model of poly I:C-stimulated peripheral blood mononuclear cells in severe asthma

por Chen, Ailu, Diaz-Soto, Maria P., Sanmamed, Miguel F., Adams, Taylor, Schupp, Jonas C., Gupta, Amolika, Britto, Clemente, Sauler, Maor, Yan, Xiting, Liu, Qing, Nino, Gustavo, Cruz, Charles S. Dela, Chupp, Geoffrey L., Gomez, Jose L.
Publicado 2021

Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis

por Tsukui, Tatsuya, Sun, Kai-Hui, Wetter, Joseph B., Wilson-Kanamori, John R., Hazelwood, Lisa A., Henderson, Neil C., Adams, Taylor S., Schupp, Jonas C., Poli, Sergio D., Rosas, Ivan O., Kaminski, Naftali, Matthay, Michael A., Wolters, Paul J., Sheppard, Dean
Publicado 2020

A Pulmonary Vascular Model From Endothelialized Whole Organ Scaffolds

por Yuan, Yifan, Leiby, Katherine L., Greaney, Allison M., Raredon, Micha Sam Brickman, Qian, Hong, Schupp, Jonas C., Engler, Alexander J., Baevova, Pavlina, Adams, Taylor S., Kural, Mehmet H., Wang, Juan, Obata, Tomohiro, Yoder, Mervin C., Kaminski, Naftali, Niklason, Laura E.
Publicado 2021

Airway basal cells show a dedifferentiated KRT17(high)Phenotype and promote fibrosis in idiopathic pulmonary fibrosis

por Jaeger, Benedikt, Schupp, Jonas Christian, Plappert, Linda, Terwolbeck, Oliver, Artysh, Nataliia, Kayser, Gian, Engelhard, Peggy, Adams, Taylor Sterling, Zweigerdt, Robert, Kempf, Henning, Lienenklaus, Stefan, Garrels, Wiebke, Nazarenko, Irina, Jonigk, Danny, Wygrecka, Malgorzata, Klatt, Denise, Schambach, Axel, Kaminski, Naftali, Prasse, Antje
Publicado 2022

A Multi-omic Analysis of the Human Lung Reveals Distinct Cell Specific Aging and Senescence Molecular Programs

por De Man, Ruben, McDonough, John E, Adams, Taylor S, Manning, Edward P, Myers, Greg, Vos, Robin, Ceulemans, Laurens, Dupont, Lieven, Vanaudenaerde, Bart M, Wuyts, Wim A, Rosas, Ivan O, Hagood, James S., Ambalavanan, Namasivayam, Niklason, Laura, Hansen, Kirk C, Yan, Xiting, Kaminski, Naftali
Publicado 2023

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis

por Adams, Taylor S., Schupp, Jonas C., Poli, Sergio, Ayaub, Ehab A., Neumark, Nir, Ahangari, Farida, Chu, Sarah G., Raby, Benjamin A., DeIuliis, Giuseppe, Januszyk, Michael, Duan, Qiaonan, Arnett, Heather A., Siddiqui, Asim, Washko, George R., Homer, Robert, Yan, Xiting, Rosas, Ivan O., Kaminski, Naftali
Publicado 2020

Single-cell connectomic analysis of adult mammalian lungs

por Raredon, Micha Sam Brickman, Adams, Taylor Sterling, Suhail, Yasir, Schupp, Jonas Christian, Poli, Sergio, Neumark, Nir, Leiby, Katherine L., Greaney, Allison Marie, Yuan, Yifan, Horien, Corey, Linderman, George, Engler, Alexander J., Boffa, Daniel J., Kluger, Yuval, Rosas, Ivan O., Levchenko, Andre, Kaminski, Naftali, Niklason, Laura E.
Publicado 2019