The interplay of 3D genome organization with UV-induced DNA damage and repair

por Akköse, Ümit, Adebali, Ogün
Publicado 2023

Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis

por AKKÖSE, Ümit, ADEBALİ, Ogün
Publicado 2023

Phylostat: a web-based tool to analyze paralogous clade divergence in phylogenetic trees

por ÖZÇELİK, Elif, KURU, Nurdan, ADEBALİ, Ogün
Publicado 2021

Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs

por Yimit, Askar, Adebali, Ogun, Sancar, Aziz, Jiang, Yuchao
Publicado 2019

Evolutionary association of receptor-wide amino acids with G protein–coupling selectivity in aminergic GPCRs

por Selçuk, Berkay, Erol, Ismail, Durdağı, Serdar, Adebali, Ogün
Publicado 2022

Discovering misannotated lncRNAs using deep learning training dynamics

por Nabi, Afshan, Dilekoglu, Berke, Adebali, Ogun, Tastan, Oznur
Publicado 2022

Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns

por Oztas, Onur, Selby, Christopher P., Sancar, Aziz, Adebali, Ogun
Publicado 2018

Establishing the precise evolutionary history of a gene improves prediction of disease-causing missense mutations

por Adebali, Ogun, Reznik, Alexander O., Ory, Daniel S., Zhulin, Igor B.
Publicado 2016

The Mutation Profile of SARS-CoV-2 Is Primarily Shaped by the Host Antiviral Defense

por Azgari, Cem, Kilinc, Zeynep, Turhan, Berk, Circi, Defne, Adebali, Ogun
Publicado 2021

Genome-wide transcription-coupled repair in Escherichia coli is mediated by the Mfd translocase

por Adebali, Ogun, Chiou, Yi-Ying, Hu, Jinchuan, Sancar, Aziz, Selby, Christopher P.
Publicado 2017

PHACT: Phylogeny-Aware Computing of Tolerance for Missense Mutations

por Kuru, Nurdan, Dereli, Onur, Akkoyun, Emrah, Bircan, Aylin, Tastan, Oznur, Adebali, Ogun
Publicado 2022

Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes

por Upadhyay, Amit A., Fleetwood, Aaron D., Adebali, Ogun, Finn, Robert D., Zhulin, Igor B.
Publicado 2016

MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems

por Gumerov, Vadim M, Ortega, Davi R, Adebali, Ogun, Ulrich, Luke E, Zhulin, Igor B
Publicado 2020

Phylogenetic analysis of SARS-CoV-2 genomes in Turkey

por ADEBALİ, Ogün, BİRCAN, Aylin, ÇİRCİ, Defne, İŞLEK, Burak, KILINÇ, Zeynep, SELÇUK, Berkay, TURHAN, Berk
Publicado 2020

Effects of replication domains on genome-wide UV-induced DNA damage and repair

por Huang, Yanchao, Azgari, Cem, Yin, Mengdie, Chiou, Yi-Ying, Lindsey-Boltz, Laura A., Sancar, Aziz, Hu, Jinchuan, Adebali, Ogun
Publicado 2022

Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events

por Akkose, Umit, Kaya, Veysel Ogulcan, Lindsey-Boltz, Laura, Karagoz, Zeynep, Brown, Adam D., Larsen, Peter A., Yoder, Anne D., Sancar, Aziz, Adebali, Ogun
Publicado 2021

The Mfd protein is the transcription-repair coupling factor (TRCF) in Mycobacterium smegmatis

por Adebali, Ogun, Yang, Yanyan, Neupane, Pradeep, Dike, Nneka I., Boltz, Julia L., Kose, Cansu, Braunstein, Miriam, Selby, Christopher P., Sancar, Aziz, Lindsey-Boltz, Laura A.
Publicado 2023

Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers

por Piepoli, Sofia, Barakat, Sarah, Nogay, Liyne, Şimşek, Büşra, Akkose, Umit, Taskiran, Hakan, Tolay, Nazife, Gezen, Melike, Yeşilada, Canberk Yarkın, Tuncay, Mustafa, Adebali, Ogün, Atilgan, Canan, Erman, Batu
Publicado 2022

CSB-independent, XPC-dependent transcription-coupled repair in Drosophila

por Deger, Nazli, Cao, Xuemei, Selby, Christopher P., Gulec, Saygin, Kawara, Hiroaki, Dewey, Evan B., Wang, Li, Yang, Yanyan, Archibald, Sierra, Selcuk, Berkay, Adebali, Ogun, Sekelsky, Jeff, Sancar, Aziz, Liu, Zhenxing
Publicado 2022

SURF1 related Leigh syndrome: Clinical and molecular findings of 16 patients from Turkey

por Kose, Melis, Canda, Ebru, Kagnici, Mehtap, Aykut, Ayça, Adebali, Ogün, Durmaz, Asude, Bircan, Aylin, Diniz, Gulden, Eraslan, Cenk, Kose, Engin, Ünalp, Aycan, Yılmaz, Ünsal, Ozyilmaz, Berk, Özdemir, Taha Reşid, Atik, Tahir, Uçar, Sema Kalkan, McFarland, Robert, Taylor, Robert W., Brown, Garry K., Çoker, Mahmut, Özkınay, Ferda
Publicado 2020