Tagmentation-based single-cell genomics

por Adey, Andrew C.
Publicado 2021

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing

por Adey, Andrew, Shendure, Jay
Publicado 2012

sciMET-cap: High-throughput single-cell methylation analysis with a reduced sequencing burden

por Acharya, Sonia N., Nichols, Ruth V., Rylaarsdam, Lauren E., O’Connell, Brendan L., Braun, Theodore P., Adey, Andrew C.
Publicado 2023

Epigenetic loss of heterogeneity from low to high grade localized prostate tumours

por Eksi, Sebnem Ece, Chitsazan, Alex, Sayar, Zeynep, Thomas, George V., Fields, Andrew J., Kopp, Ryan P., Spellman, Paul T., Adey, Andrew C.
Publicado 2021

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

por Adey, Andrew, Burton, Joshua N., Kitzman, Jacob O., Hiatt, Joseph B., Lewis, Alexandra P., Martin, Beth K., Qiu, Ruolan, Lee, Choli, Shendure, Jay
Publicado 2013

megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering

por Boissel, Sandrine, Jarjour, Jordan, Astrakhan, Alexander, Adey, Andrew, Gouble, Agnès, Duchateau, Philippe, Shendure, Jay, Stoddard, Barry L., Certo, Michael T., Baker, David, Scharenberg, Andrew M.
Publicado 2014

The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae)

por Soza, Valerie L, Lindsley, Dale, Waalkes, Adam, Ramage, Elizabeth, Patwardhan, Rupali P, Burton, Joshua N, Adey, Andrew, Kumar, Akash, Qiu, Ruolan, Shendure, Jay, Hall, Benjamin
Publicado 2019

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

por Adey, Andrew, Kitzman, Jacob O., Burton, Joshua N., Daza, Riza, Kumar, Akash, Christiansen, Lena, Ronaghi, Mostafa, Amini, Sasan, L. Gunderson, Kevin, Steemers, Frank J., Shendure, Jay
Publicado 2014

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

por Adey, Andrew, Morrison, Hilary G, Asan, Xun, Xu, Kitzman, Jacob O, Turner, Emily H, Stackhouse, Bethany, MacKenzie, Alexandra P, Caruccio, Nicholas C, Zhang, Xiuqing, Shendure, Jay
Publicado 2010

High-throughput robust single-cell DNA methylation profiling with sciMETv2

por Nichols, Ruth V., O’Connell, Brendan L., Mulqueen, Ryan M., Thomas, Jerushah, Woodfin, Ashley R., Acharya, Sonia, Mandel, Gail, Pokholok, Dmitry, Steemers, Frank J., Adey, Andrew C.
Publicado 2022

The accessible chromatin landscape of the murine hippocampus at single-cell resolution

por Sinnamon, John R., Torkenczy, Kristof A., Linhoff, Michael W., Vitak, Sarah A., Mulqueen, Ryan M., Pliner, Hannah A., Trapnell, Cole, Steemers, Frank J., Mandel, Gail, Adey, Andrew C.
Publicado 2019

Post-translational modification localizes MYC to the nuclear pore basket to regulate a subset of target genes involved in cellular responses to environmental signals

por Su, Yulong, Pelz, Carl, Huang, Tao, Torkenczy, Kristof, Wang, Xiaoyan, Cherry, Allison, Daniel, Colin J., Liang, Juan, Nan, Xiaolin, Dai, Mu-Shui, Adey, Andrew, Impey, Soren, Sears, Rosalie C.
Publicado 2018

Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing

por O'Connell, Brendan L., Nichols, Ruth V., Pokholok, Dmitry, Thomas, Jerushah, Acharya, Sonia N., Nishida, Andrew, Thornton, Casey A., Co, Marissa, Fields, Andrew J., Steemers, Frank J., Adey, Andrew C.
Publicado 2023

Accessible high-throughput single-cell whole-genome sequencing with paired chromatin accessibility

por Queitsch, Konstantin, Moore, Travis W., O’Connell, Brendan L., Nichols, Ruth V., Muschler, John L., Keith, Dove, Lopez, Charles, Sears, Rosalie C., Mills, Gordon B., Yardımcı, Galip Gürkan, Adey, Andrew C.
Publicado 2023

Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data

por Sun, Duanchen, Guan, Xiangnan, Moran, Amy E., Wu, Ling-Yun, Qian, David Z., Schedin, Pepper, Dai, Mu-Shui, Danilov, Alexey V., Alumkal, Joshi J., Adey, Andrew C., Spellman, Paul T., Xia, Zheng
Publicado 2022

Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion

por Daughtry, Brittany L., Rosenkrantz, Jimi L., Lazar, Nathan H., Fei, Suzanne S., Redmayne, Nash, Torkenczy, Kristof A., Adey, Andrew, Yan, Melissa, Gao, Lina, Park, Byung, Nevonen, Kimberly A., Carbone, Lucia, Chavez, Shawn L.
Publicado 2019

High-content single-cell combinatorial indexing

por Mulqueen, Ryan M., Pokholok, Dmitry, O’Connell, Brendan L., Thornton, Casey A., Zhang, Fan, O’Roak, Brian J., Link, Jason, Yardımcı, Galip Gürkan, Sears, Rosalie C., Steemers, Frank J., Adey, Andrew C.
Publicado 2021

Supervised learning of high-confidence phenotypic subpopulations from single-cell data

por Ren, Tao, Chen, Canping, Danilov, Alexey V., Liu, Susan, Guan, Xiangnan, Du, Shunyi, Wu, Xiwei, Sherman, Mara H., Spellman, Paul T., Coussens, Lisa M., Adey, Andrew C., Mills, Gordon B., Wu, Ling-Yun, Xia, Zheng
Publicado 2023

Decoding long nanopore sequencing reads of natural DNA

por Laszlo, Andrew H., Derrington, Ian M., Ross, Brian C., Brinkerhoff, Henry, Adey, Andrew, Nova, Ian C., Craig, Jonathan M., Langford, Kyle W., Samson, Jenny Mae, Daza, Riza, Doering, Kenji, Shendure, Jay, Gundlach, Jens H.
Publicado 2014

Highly scalable generation of DNA methylation profiles in single cells

por Mulqueen, Ryan M., Pokholok, Dmitry, Norberg, Steve, Torkenczy, Kristof A., Fields, Andrew J., Sun, Duanchen, Sinnamon, John R., Shendure, Jay, Trapnell, Cole, O’Roak, Brian J., Xia, Zheng, Steemers, Frank J., Adey, Andrew C.
Publicado 2018