X-inactivation: quantitative predictions of protein interactions in the Xist network

por Agostini, Federico, Cirillo, Davide, Bolognesi, Benedetta, Tartaglia, Gian Gaetano
Publicado 2013

SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences

por Agostini, Federico, Cirillo, Davide, Ponti, Riccardo Delli, Tartaglia, Gian Gaetano
Publicado 2014

BLVector: Fast BLAST-Like Algorithm for Manycore CPU With Vectorization

por Gálvez, Sergio, Agostini, Federico, Caselli, Javier, Hernandez, Pilar, Dorado, Gabriel
Publicado 2021

Intergenic RNA mainly derives from nascent transcripts of known genes

por Agostini, Federico, Zagalak, Julian, Attig, Jan, Ule, Jernej, Luscombe, Nicholas M.
Publicado 2021

Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas

por Harbers, Luuk, Agostini, Federico, Nicos, Marcin, Poddighe, Dimitri, Bienko, Magda, Crosetto, Nicola
Publicado 2021

catRAPID omics: a web server for large-scale prediction of protein–RNA interactions

por Agostini, Federico, Zanzoni, Andreas, Klus, Petr, Marchese, Domenica, Cirillo, Davide, Tartaglia, Gian Gaetano
Publicado 2013

The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities

por Klus, Petr, Bolognesi, Benedetta, Agostini, Federico, Marchese, Domenica, Zanzoni, Andreas, Tartaglia, Gian Gaetano
Publicado 2014

ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli

por Agostini, Federico, Cirillo, Davide, Livi, Carmen Maria, Delli Ponti, Riccardo, Tartaglia, Gian Gaetano
Publicado 2014

Constitutive patterns of gene expression regulated by RNA-binding proteins

por Cirillo, Davide, Marchese, Domenica, Agostini, Federico, Livi, Carmen Maria, Botta-Orfila, Teresa, Tartaglia, Gian Gaetano
Publicado 2014

An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination

por Ballarino, Roberto, Bouwman, Britta A. M., Agostini, Federico, Harbers, Luuk, Diekmann, Constantin, Wernersson, Erik, Bienko, Magda, Crosetto, Nicola
Publicado 2022

Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model Brachypodium Grasses

por Decena, Maria Angeles, Gálvez-Rojas, Sergio, Agostini, Federico, Sancho, Ruben, Contreras-Moreira, Bruno, Des Marais, David L., Hernandez, Pilar, Catalán, Pilar
Publicado 2021

Control of protein synthesis through mRNA pseudouridylation by dyskerin

por Pederiva, Chiara, Trevisan, Davide M., Peirasmaki, Dimitra, Chen, Shan, Savage, Sharon A., Larsson, Ola, Ule, Jernej, Baranello, Laura, Agostini, Federico, Farnebo, Marianne
Publicado 2023

Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein

por Zanzoni, Andreas, Marchese, Domenica, Agostini, Federico, Bolognesi, Benedetta, Cirillo, Davide, Botta-Orfila, Maria, Livi, Carmen Maria, Rodriguez-Mulero, Silvia, Tartaglia, Gian Gaetano
Publicado 2013

GPSeq reveals the radial organization of chromatin in the cell nucleus

por Girelli, Gabriele, Custodio, Joaquin, Kallas, Tomasz, Agostini, Federico, Wernersson, Erik, Spanjaard, Bastiaan, Mota, Ana, Kolbeinsdottir, Solrun, Gelali, Eleni, Crosetto, Nicola, Bienko, Magda
Publicado 2020

Disulfide Bonds Reduce the Toxicity of the Amyloid Fibrils Formed by an Extracellular Protein**

por Mossuto, Maria F, Bolognesi, Benedetta, Guixer, Bernat, Dhulesia, Anne, Agostini, Federico, Kumita, Janet R, Tartaglia, Gian G, Dumoulin, Mireille, Dobson, Christopher M, Salvatella, Xavier
Publicado 2011

Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing

por Attig, Jan, Agostini, Federico, Gooding, Clare, Chakrabarti, Anob M., Singh, Aarti, Haberman, Nejc, Zagalak, Julian A., Emmett, Warren, Smith, Christopher W.J., Luscombe, Nicholas M., Ule, Jernej
Publicado 2018

iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture

por Gelali, Eleni, Girelli, Gabriele, Matsumoto, Masahiro, Wernersson, Erik, Custodio, Joaquin, Mota, Ana, Schweitzer, Maud, Ferenc, Katalin, Li, Xinge, Mirzazadeh, Reza, Agostini, Federico, Schell, John P., Lanner, Fredrik, Crosetto, Nicola, Bienko, Magda
Publicado 2019

Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis

por Mastropasqua, Francesca, Oksanen, Marika, Soldini, Cristina, Alatar, Shemim, Arora, Abishek, Ballarino, Roberto, Molinari, Maya, Agostini, Federico, Poulet, Axel, Watts, Michelle, Rabkina, Ielyzaveta, Becker, Martin, Li, Danyang, Anderlid, Britt-Marie, Isaksson, Johan, Lundin Remnelius, Karl, Moslem, Mohsen, Jacob, Yannick, Falk, Anna, Crosetto, Nicola, Bienko, Magda, Santini, Emanuela, Borgkvist, Anders, Bölte, Sven, Tammimies, Kristiina
Publicado 2023

RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

por Bonetti, Alessandro, Agostini, Federico, Suzuki, Ana Maria, Hashimoto, Kosuke, Pascarella, Giovanni, Gimenez, Juliette, Roos, Leonie, Nash, Alex J., Ghilotti, Marco, Cameron, Christopher J.  F., Valentine, Matthew, Medvedeva, Yulia A., Noguchi, Shuhei, Agirre, Eneritz, Kashi, Kaori, Samudyata, Luginbühl, Joachim, Cazzoli, Riccardo, Agrawal, Saumya, Luscombe, Nicholas M., Blanchette, Mathieu, Kasukawa, Takeya, Hoon, Michiel de, Arner, Erik, Lenhard, Boris, Plessy, Charles, Castelo-Branco, Gonçalo, Orlando, Valerio, Carninci, Piero
Publicado 2020

Author Correction: RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

por Bonetti, Alessandro, Agostini, Federico, Suzuki, Ana Maria, Hashimoto, Kosuke, Pascarella, Giovanni, Gimenez, Juliette, Roos, Leonie, Nash, Alex J., Ghilotti, Marco, Cameron, Christopher J. F., Valentine, Matthew, Medvedeva, Yulia A., Noguchi, Shuhei, Agirre, Eneritz, Kashi, Kaori, Samudyata, Luginbühl, Joachim, Cazzoli, Riccardo, Agrawal, Saumya, Luscombe, Nicholas M., Blanchette, Mathieu, Kasukawa, Takeya, de Hoon, Michiel, Arner, Erik, Lenhard, Boris, Plessy, Charles, Castelo-Branco, Gonçalo, Orlando, Valerio, Carninci, Piero
Publicado 2021