Analysis of deterministic cyclic gene regulatory network models with delays

por Ahsen, Mehmet Eren, Özbay, Hitay, Niculescu, Silviu-Iulian
Publicado 2015

The Fermi–Dirac distribution provides a calibrated probabilistic output for binary classifiers

por Kim, Sung-Cheol, Arun, Adith S., Ahsen, Mehmet Eren, Vogel, Robert, Stolovitzky, Gustavo
Publicado 2021

NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers

por Ahsen, Mehmet Eren, Chun, Yoojin, Grishin, Alexander, Grishina, Galina, Stolovitzky, Gustavo, Pandey, Gaurav, Bunyavanich, Supinda
Publicado 2019

COSIFER: a Python package for the consensus inference of molecular interaction networks

por Manica, Matteo, Bunne, Charlotte, Mathis, Roland, Cadow, Joris, Ahsen, Mehmet Eren, Stolovitzky, Gustavo A, Martínez, María Rodríguez
Publicado 2020

The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies

por Diaz, Jennifer EL, Ahsen, Mehmet Eren, Schaffter, Thomas, Chen, Xintong, Realubit, Ronald B, Karan, Charles, Califano, Andrea, Losic, Bojan, Stolovitzky, Gustavo
Publicado 2020

Sparse feature selection for classification and prediction of metastasis in endometrial cancer

por Ahsen, Mehmet Eren, Boren, Todd P., Singh, Nitin K., Misganaw, Burook, Mutch, David G., Moore, Kathleen N., Backes, Floor J., McCourt, Carolyn K., Lea, Jayanthi S., Miller, David S., White, Michael A., Vidyasagar, Mathukumalli
Publicado 2017

External Validation of an Ensemble Model for Automated Mammography Interpretation by Artificial Intelligence

por Hsu, William, Hippe, Daniel S., Nakhaei, Noor, Wang, Pin-Chieh, Zhu, Bing, Siu, Nathan, Ahsen, Mehmet Eren, Lotter, William, Sorensen, A. Gregory, Naeim, Arash, Buist, Diana S. M., Schaffter, Thomas, Guinney, Justin, Elmore, Joann G., Lee, Christoph I.
Publicado 2022

Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data

por Roy, Subhrajit, Kiral, Isabell, Mirmomeni, Mahtab, Mummert, Todd, Braz, Alan, Tsay, Jason, Tang, Jianbin, Asif, Umar, Schaffter, Thomas, Ahsen, Mehmet Eren, Iwamori, Toshiya, Yanagisawa, Hiroki, Poonawala, Hasan, Madan, Piyush, Qin, Yong, Picone, Joseph, Obeid, Iyad, Marques, Bruno De Assis, Maetschke, Stefan, Khalaf, Rania, Rosen-Zvi, Michal, Stolovitzky, Gustavo, Harrer, Stefan
Publicado 2021

Transcriptomic characterization of cancer-testis antigens identifies MAGEA3 as a driver of tumor progression in hepatocellular carcinoma

por Craig, Amanda J., Garcia-Lezana, Teresa, Ruiz de Galarreta, Marina, Villacorta-Martin, Carlos, Kozlova, Edgar G., Martins-Filho, Sebastiao N., von Felden, Johann, Ahsen, Mehmet Eren, Bresnahan, Erin, Hernandez-Meza, Gabriela, Labgaa, Ismail, D’Avola, Delia, Schwartz, Myron, Llovet, Josep M., Sia, Daniela, Thung, Swan, Losic, Bojan, Lujambio, Amaia, Villanueva, Augusto
Publicado 2021

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

por Fourati, Slim, Talla, Aarthi, Mahmoudian, Mehrad, Burkhart, Joshua G., Klén, Riku, Henao, Ricardo, Yu, Thomas, Aydın, Zafer, Yeung, Ka Yee, Ahsen, Mehmet Eren, Almugbel, Reem, Jahandideh, Samad, Liang, Xiao, Nordling, Torbjörn E. M., Shiga, Motoki, Stanescu, Ana, Vogel, Robert, Pandey, Gaurav, Chiu, Christopher, McClain, Micah T., Woods, Christopher W., Ginsburg, Geoffrey S., Elo, Laura L., Tsalik, Ephraim L., Mangravite, Lara M., Sieberts, Solveig K.
Publicado 2018

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

por Menden, Michael P., Wang, Dennis, Mason, Mike J., Szalai, Bence, Bulusu, Krishna C., Guan, Yuanfang, Yu, Thomas, Kang, Jaewoo, Jeon, Minji, Wolfinger, Russ, Nguyen, Tin, Zaslavskiy, Mikhail, Jang, In Sock, Ghazoui, Zara, Ahsen, Mehmet Eren, Vogel, Robert, Neto, Elias Chaibub, Norman, Thea, Tang, Eric K. Y., Garnett, Mathew J., Veroli, Giovanni Y. Di, Fawell, Stephen, Stolovitzky, Gustavo, Guinney, Justin, Dry, Jonathan R., Saez-Rodriguez, Julio
Publicado 2019

Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data

por Tanevski, Jovan, Nguyen, Thin, Truong, Buu, Karaiskos, Nikos, Ahsen, Mehmet Eren, Zhang, Xinyu, Shu, Chang, Xu, Ke, Liang, Xiaoyu, Hu, Ying, Pham, Hoang VV, Xiaomei, Li, Le, Thuc D, Tarca, Adi L, Bhatti, Gaurav, Romero, Roberto, Karathanasis, Nestoras, Loher, Phillipe, Chen, Yang, Ouyang, Zhengqing, Mao, Disheng, Zhang, Yuping, Zand, Maryam, Ruan, Jianhua, Hafemeister, Christoph, Qiu, Peng, Tran, Duc, Nguyen, Tin, Gabor, Attila, Yu, Thomas, Guinney, Justin, Glaab, Enrico, Krause, Roland, Banda, Peter, Stolovitzky, Gustavo, Rajewsky, Nikolaus, Saez-Rodriguez, Julio, Meyer, Pablo
Publicado 2020

Radiogenomics Consortium Genome-Wide Association Study Meta-Analysis of Late Toxicity After Prostate Cancer Radiotherapy

por Kerns, Sarah L, Fachal, Laura, Dorling, Leila, Barnett, Gillian C, Baran, Andrea, Peterson, Derick R, Hollenberg, Michelle, Hao, Ke, Narzo, Antonio Di, Ahsen, Mehmet Eren, Pandey, Gaurav, Bentzen, Søren M, Janelsins, Michelle, Elliott, Rebecca M, Pharoah, Paul D P, Burnet, Neil G, Dearnaley, David P, Gulliford, Sarah L, Hall, Emma, Sydes, Matthew R, Aguado-Barrera, Miguel E, Gómez-Caamaño, Antonio, Carballo, Ana M, Peleteiro, Paula, Lobato-Busto, Ramón, Stock, Richard, Stone, Nelson N, Ostrer, Harry, Usmani, Nawaid, Singhal, Sandeep, Tsuji, Hiroshi, Imai, Takashi, Saito, Shiro, Eeles, Rosalind, DeRuyck, Kim, Parliament, Matthew, Dunning, Alison M, Vega, Ana, Rosenstein, Barry S, West, Catharine M L
Publicado 2019

Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms

por Schaffter, Thomas, Buist, Diana S. M., Lee, Christoph I., Nikulin, Yaroslav, Ribli, Dezső, Guan, Yuanfang, Lotter, William, Jie, Zequn, Du, Hao, Wang, Sijia, Feng, Jiashi, Feng, Mengling, Kim, Hyo-Eun, Albiol, Francisco, Albiol, Alberto, Morrell, Stephen, Wojna, Zbigniew, Ahsen, Mehmet Eren, Asif, Umar, Jimeno Yepes, Antonio, Yohanandan, Shivanthan, Rabinovici-Cohen, Simona, Yi, Darvin, Hoff, Bruce, Yu, Thomas, Chaibub Neto, Elias, Rubin, Daniel L., Lindholm, Peter, Margolies, Laurie R., McBride, Russell Bailey, Rothstein, Joseph H., Sieh, Weiva, Ben-Ari, Rami, Harrer, Stefan, Trister, Andrew, Friend, Stephen, Norman, Thea, Sahiner, Berkman, Strand, Fredrik, Guinney, Justin, Stolovitzky, Gustavo, Mackey, Lester, Cahoon, Joyce, Shen, Li, Sohn, Jae Ho, Trivedi, Hari, Shen, Yiqiu, Buturovic, Ljubomir, Pereira, Jose Costa, Cardoso, Jaime S., Castro, Eduardo, Kalleberg, Karl Trygve, Pelka, Obioma, Nedjar, Imane, Geras, Krzysztof J., Nensa, Felix, Goan, Ethan, Koitka, Sven, Caballero, Luis, Cox, David D., Krishnaswamy, Pavitra, Pandey, Gaurav, Friedrich, Christoph M., Perrin, Dimitri, Fookes, Clinton, Shi, Bibo, Cardoso Negrie, Gerard, Kawczynski, Michael, Cho, Kyunghyun, Khoo, Can Son, Lo, Joseph Y., Sorensen, A. Gregory, Jung, Hwejin
Publicado 2020