A Genome-Scale Metabolic Model of 2,3-Butanediol Production by Thermophilic Bacteria Geobacillus icigianus

por Kulyashov, Mikhail, Peltek, Sergey E., Akberdin, Ilya R.
Publicado 2020

Numerous Trigger-like Interactions of Kinases/Protein Phosphatases in Human Skeletal Muscles Can Underlie Transient Processes in Activation of Signaling Pathways during Exercise

por Vertyshev, Alexander Yu., Akberdin, Ilya R., Kolpakov, Fedor A.
Publicado 2023

Metabolic model of central carbon and energy metabolisms of growing Arabidopsis thaliana in relation to sucrose translocation

por Zakhartsev, Maksim, Medvedeva, Irina, Orlov, Yury, Akberdin, Ilya, Krebs, Olga, Schulze, Waltraud X.
Publicado 2016

Fatty Acid Biosynthesis Pathways in Methylomicrobium buryatense 5G(B1)

por Demidenko, Aleksandr, Akberdin, Ilya R., Allemann, Marco, Allen, Eric E., Kalyuzhnaya, Marina G.
Publicado 2017

Impact of Negative Feedbacks on De Novo Pyrimidines Biosynthesis in Escherichia coli

por Akberdin, Ilya R., Kozlov, Konstantin N., Kazantsev, Fedor V., Fadeev, Stanislav I., Likhoshvai, Vitaly A., Khlebodarova, Tamara M.
Publicado 2023

The Phylogeny of Class B Flavoprotein Monooxygenases and the Origin of the YUCCA Protein Family

por Turnaev, Igor I., Gunbin, Konstantin V., Suslov, Valentin V., Akberdin, Ilya R., Kolchanov, Nikolay A., Afonnikov, Dmitry A.
Publicado 2020

Methane utilization in Methylomicrobium alcaliphilum 20Z(R): a systems approach

por Akberdin, Ilya R., Thompson, Merlin, Hamilton, Richard, Desai, Nalini, Alexander, Danny, Henard, Calvin A., Guarnieri, Michael T., Kalyuzhnaya, Marina G.
Publicado 2018

Author Correction: Methane utilization in Methylomicrobium alcaliphilum 20Z(R): a systems approach

por Akberdin, Ilya R., Thompson, Merlin, Hamilton, Richard, Desai, Nalini, Alexander, Danny, Henard, Calvin A., Guarnieri, Michael T., Kalyuzhnaya, Marina G.
Publicado 2018

A Modular Mathematical Model of Exercise-Induced Changes in Metabolism, Signaling, and Gene Expression in Human Skeletal Muscle

por Akberdin, Ilya R., Kiselev, Ilya N., Pintus, Sergey S., Sharipov, Ruslan N., Vertyshev, Alexander Yu, Vinogradova, Olga L., Popov, Daniil V., Kolpakov, Fedor A.
Publicado 2021

Rare Earth Elements Alter Redox Balance in Methylomicrobium alcaliphilum 20Z(R)

por Akberdin, Ilya R., Collins, David A., Hamilton, Richard, Oshchepkov, Dmitry Y., Shukla, Anil K., Nicora, Carrie D., Nakayasu, Ernesto S., Adkins, Joshua N., Kalyuzhnaya, Marina G.
Publicado 2018

Physiologically Based Pharmacokinetic Modeling of Nanoparticle Biodistribution: A Review of Existing Models, Simulation Software, and Data Analysis Tools

por Kutumova, Elena O., Akberdin, Ilya R., Kiselev, Ilya N., Sharipov, Ruslan N., Egorova, Vera S., Syrocheva, Anastasiia O., Parodi, Alessandro, Zamyatnin, Andrey A., Kolpakov, Fedor A.
Publicado 2022

BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data

por Kolpakov, Fedor, Akberdin, Ilya, Kashapov, Timur, Kiselev, llya, Kolmykov, Semyon, Kondrakhin, Yury, Kutumova, Elena, Mandrik, Nikita, Pintus, Sergey, Ryabova, Anna, Sharipov, Ruslan, Yevshin, Ivan, Kel, Alexander
Publicado 2019

BioUML—towards a universal research platform

por Kolpakov, Fedor, Akberdin, Ilya, Kiselev, Ilya, Kolmykov, Semyon, Kondrakhin, Yury, Kulyashov, Mikhail, Kutumova, Elena, Pintus, Sergey, Ryabova, Anna, Sharipov, Ruslan, Yevshin, Ivan, Zhatchenko, Sergey, Kel, Alexander
Publicado 2022

Pluripotency gene network dynamics: System views from parametric analysis

por Akberdin, Ilya R., Omelyanchuk, Nadezda A., Fadeev, Stanislav I., Leskova, Natalya E., Oschepkova, Evgeniya A., Kazantsev, Fedor V., Matushkin, Yury G., Afonnikov, Dmitry A., Kolchanov, Nikolay A.
Publicado 2018

Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle

por Pintus, Sergey S., Akberdin, Ilya R., Yevshin, Ivan, Makhnovskii, Pavel, Tyapkina, Oksana, Nigmetzyanov, Islam, Nurullin, Leniz, Devyatiyarov, Ruslan, Shagimardanova, Elena, Popov, Daniil, Kolpakov, Fedor A., Gusev, Oleg, Gazizova, Guzel R.
Publicado 2021

A New Stochastic Model for Subgenomic Hepatitis C Virus Replication Considers Drug Resistant Mutants

por Ivanisenko, Nikita V., Mishchenko, Elena L., Akberdin, Ilya R., Demenkov, Pavel S., Likhoshvai, Vitaly A., Kozlov, Konstantin N., Todorov, Dmitry I., Gursky, Vitaly V., Samsonova, Maria G., Samsonov, Alexander M., Clausznitzer, Diana, Kaderali, Lars, Kolchanov, Nikolay A., Ivanisenko, Vladimir A.
Publicado 2014