Caretta – A multiple protein structure alignment and feature extraction suite

por Akdel, Mehmet, Durairaj, Janani, de Ridder, Dick, van Dijk, Aalt D.J.
Publicado 2020

From sequence to function through structure: Deep learning for protein design

por Ferruz, Noelia, Heinzinger, Michael, Akdel, Mehmet, Goncearenco, Alexander, Naef, Luca, Dallago, Christian
Publicado 2022

Signal-based optical map alignment

por Akdel, Mehmet, van de Geest, Henri, Schijlen, Elio, van Rijswijck, Irma M. H., Smid, Eddy J., Sanchez-Perez, Gabino, de Ridder, Dick
Publicado 2021

Uncovering new families and folds in the natural protein universe

por Durairaj, Janani, Waterhouse, Andrew M., Mets, Toomas, Brodiazhenko, Tetiana, Abdullah, Minhal, Studer, Gabriel, Tauriello, Gerardo, Akdel, Mehmet, Andreeva, Antonina, Bateman, Alex, Tenson, Tanel, Hauryliuk, Vasili, Schwede, Torsten, Pereira, Joana
Publicado 2023

A structural biology community assessment of AlphaFold2 applications

por Akdel, Mehmet, Pires, Douglas E. V., Pardo, Eduard Porta, Jänes, Jürgen, Zalevsky, Arthur O., Mészáros, Bálint, Bryant, Patrick, Good, Lydia L., Laskowski, Roman A., Pozzati, Gabriele, Shenoy, Aditi, Zhu, Wensi, Kundrotas, Petras, Serra, Victoria Ruiz, Rodrigues, Carlos H. M., Dunham, Alistair S., Burke, David, Borkakoti, Neera, Velankar, Sameer, Frost, Adam, Basquin, Jérôme, Lindorff-Larsen, Kresten, Bateman, Alex, Kajava, Andrey V., Valencia, Alfonso, Ovchinnikov, Sergey, Durairaj, Janani, Ascher, David B., Thornton, Janet M., Davey, Norman E., Stein, Amelie, Elofsson, Arne, Croll, Tristan I., Beltrao, Pedro
Publicado 2022