Bygiene: The New Paradigm of Bidirectional Hygiene

por Al-Ghalith, Gabriel A., Knights, Dan
Publicado 2015

NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes

por Al-Ghalith, Gabriel A., Montassier, Emmanuel, Ward, Henry N., Knights, Dan
Publicado 2016

SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control

por Al-Ghalith, Gabriel A., Hillmann, Benjamin, Ang, Kaiwei, Shields-Cutler, Robin, Knights, Dan
Publicado 2018

Development of the Human Mycobiome over the First Month of Life and across Body Sites

por Ward, Tonya L., Dominguez-Bello, Maria Gloria, Heisel, Tim, Al-Ghalith, Gabriel, Knights, Dan, Gale, Cheryl A.
Publicado 2018

High-Throughput flaA Short Variable Region Sequencing to Assess Campylobacter Diversity in Fecal Samples From Birds

por Zhang, Qian, Al-Ghalith, Gabriel A., Kobayashi, Mayumi, Segawa, Takahiro, Maeda, Mitsuto, Okabe, Satoshi, Knights, Dan, Ishii, Satoshi
Publicado 2018

High-Fat Diet Changes Fungal Microbiomes and Interkingdom Relationships in the Murine Gut

por Heisel, Timothy, Montassier, Emmanuel, Johnson, Abigail, Al-Ghalith, Gabriel, Lin, Yi-Wei, Wei, Li-Na, Knights, Dan, Gale, Cheryl A.
Publicado 2017

Skin surface biomarkers are associated with future development of atopic dermatitis in children with family history of allergic disease

por Sato, Takahiro, Nikolovski, Janet, Gould, Russell, Lboukili, Imane, Roux, Pierre‐Francois, Al‐Ghalith, Gabriel, Orie, Jeremy, Insel, Richard, Stamatas, Georgios N.
Publicado 2023

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi)

por Springer, Andrea, Fichtel, Claudia, Al‐Ghalith, Gabriel A., Koch, Flávia, Amato, Katherine R., Clayton, Jonathan B., Knights, Dan, Kappeler, Peter M.
Publicado 2017

Evaluating the Information Content of Shallow Shotgun Metagenomics

por Hillmann, Benjamin, Al-Ghalith, Gabriel A., Shields-Cutler, Robin R., Zhu, Qiyun, Gohl, Daryl M., Beckman, Kenneth B., Knight, Rob, Knights, Dan
Publicado 2018

CLOUD: a non-parametric detection test for microbiome outliers

por Montassier, Emmanuel, Al-Ghalith, Gabriel A., Hillmann, Benjamin, Viskocil, Kimberly, Kabage, Amanda J., McKinlay, Christopher E., Sadowsky, Michael J., Khoruts, Alexander, Knights, Dan
Publicado 2018

Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection

por Montassier, Emmanuel, Al-Ghalith, Gabriel A., Ward, Tonya, Corvec, Stephane, Gastinne, Thomas, Potel, Gilles, Moreau, Phillipe, de la Cochetiere, Marie France, Batard, Eric, Knights, Dan
Publicado 2016

Erratum to: Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection

por Montassier, Emmanuel, Al-Ghalith, Gabriel A., Ward, Tonya, Corvec, Stephane, Gastinne, Thomas, Potel, Gilles, Moreau, Philippe, De La Cochetiere, Marie France, Batard, Eric, Knights, Dan
Publicado 2016

Wild primate microbiomes prevent weight gain in germ-free mice

por Sidiropoulos, Dimitrios N., Al-Ghalith, Gabriel A., Shields-Cutler, Robin R., Ward, Tonya L., Johnson, Abigail J., Vangay, Pajau, Knights, Dan, Kashyap, Purna C., Xian, Yibo, Ramer-Tait, Amanda E., Clayton, Jonathan B.
Publicado 2020

Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics

por Tierney, Braden T., Van den Abbeele, Pieter, Al-Ghalith, Gabriel A., Verstrepen, Lynn, Ghyselinck, Jonas, Calatayud, Marta, Marzorati, Massimo, Gadir, Azza A., Daisley, Brendan, Reid, Gregor, Bron, Peter A., Gevers, Dirk, Dhir, Raja, Simmons, Sheri L.
Publicado 2023

Distribution of Bacterial α1,3-Galactosyltransferase Genes in the Human Gut Microbiome

por Montassier, Emmanuel, Al-Ghalith, Gabriel A., Mathé, Camille, Le Bastard, Quentin, Douillard, Venceslas, Garnier, Abel, Guimon, Rémi, Raimondeau, Bastien, Touchefeu, Yann, Duchalais, Emilie, Vince, Nicolas, Limou, Sophie, Gourraud, Pierre-Antoine, Laplaud, David A., Nicot, Arnaud B., Soulillou, Jean-Paul, Berthelot, Laureline
Publicado 2020

Functional response to a microbial synbiotic in the gastrointestinal system of children: a randomized clinical trial

por Tierney, Braden T., Versalovic, James, Fasano, Alessio, Petrosino, Joseph F., Chumpitazi, Bruno P., Mayer, Emeran A., Boetes, Jared, Smits, Gerard, Parkar, Shanthi G., Voreades, Noah, Kartal, Ece, Al-Ghalith, Gabriel A., Pane, Marco, Bron, Peter A., Reid, Gregor, Dhir, Raja, Mason, Christopher E.
Publicado 2022

Complex host genetics influence the microbiome in inflammatory bowel disease

por Knights, Dan, Silverberg, Mark S, Weersma, Rinse K, Gevers, Dirk, Dijkstra, Gerard, Huang, Hailiang, Tyler, Andrea D, van Sommeren, Suzanne, Imhann, Floris, Stempak, Joanne M, Huang, Hu, Vangay, Pajau, Al-Ghalith, Gabriel A, Russell, Caitlin, Sauk, Jenny, Knight, Jo, Daly, Mark J, Huttenhower, Curtis, Xavier, Ramnik J
Publicado 2014

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model

por Clayton, Jonathan B., Al-Ghalith, Gabriel A., Long, Ha Thang, Tuan, Bui Van, Cabana, Francis, Huang, Hu, Vangay, Pajau, Ward, Tonya, Minh, Vo Van, Tam, Nguyen Ai, Dat, Nguyen Tat, Travis, Dominic A., Murtaugh, Michael P., Covert, Herbert, Glander, Kenneth E., Nadler, Tilo, Toddes, Barbara, Sha, John C. M., Singer, Randy, Knights, Dan, Johnson, Timothy J.
Publicado 2018

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

por Zhu, Qiyun, Mai, Uyen, Pfeiffer, Wayne, Janssen, Stefan, Asnicar, Francesco, Sanders, Jon G., Belda-Ferre, Pedro, Al-Ghalith, Gabriel A., Kopylova, Evguenia, McDonald, Daniel, Kosciolek, Tomasz, Yin, John B., Huang, Shi, Salam, Nimaichand, Jiao, Jian-Yu, Wu, Zijun, Xu, Zhenjiang Z., Cantrell, Kalen, Yang, Yimeng, Sayyari, Erfan, Rabiee, Maryam, Morton, James T., Podell, Sheila, Knights, Dan, Li, Wen-Jun, Huttenhower, Curtis, Segata, Nicola, Smarr, Larry, Mirarab, Siavash, Knight, Rob
Publicado 2019

Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity

por Zhang, Xue-Song, Li, Jackie, Krautkramer, Kimberly A, Badri, Michelle, Battaglia, Thomas, Borbet, Timothy C, Koh, Hyunwook, Ng, Sandy, Sibley, Rachel A, Li, Yuanyuan, Pathmasiri, Wimal, Jindal, Shawn, Shields-Cutler, Robin R, Hillmann, Ben, Al-Ghalith, Gabriel A, Ruiz, Victoria E, Livanos, Alexandra, van ‘t Wout, Angélique B, Nagalingam, Nabeetha, Rogers, Arlin B, Sumner, Susan Jenkins, Knights, Dan, Denu, John M, Li, Huilin, Ruggles, Kelly V, Bonneau, Richard, Williamson, R Anthony, Rauch, Marcus, Blaser, Martin J
Publicado 2018