Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time

por Schmidt, Sebastian, Alanko, Jarno N.
Publicado 2023

Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time

por Schmidt, Sebastian, Alanko, Jarno N.
Publicado 2023

A framework for space-efficient read clustering in metagenomic samples

por Alanko, Jarno, Cunial, Fabio, Belazzougui, Djamal, Mäkinen, Veli
Publicado 2017

Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes

por Alanko, Jarno N, Vuohtoniemi, Jaakko, Mäklin, Tommi, Puglisi, Simon J
Publicado 2023

Finding all maximal perfect haplotype blocks in linear time

por Alanko, Jarno, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, Stoye, Jens
Publicado 2020

Buffering updates enables efficient dynamic de Bruijn graphs

por Alanko, Jarno, Alipanahi, Bahar, Settle, Jonathen, Boucher, Christina, Gagie, Travis
Publicado 2021

Matchtigs: minimum plain text representation of k-mer sets

por Schmidt, Sebastian, Khan, Shahbaz, Alanko, Jarno N., Pibiri, Giulio E., Tomescu, Alexandru I.
Publicado 2023

Syotti: scalable bait design for DNA enrichment

por Alanko, Jarno N, Slizovskiy, Ilya B, Lokshtanov, Daniel, Gagie, Travis, Noyes, Noelle R, Boucher, Christina
Publicado 2022

Bacterial genomic epidemiology with mixed samples

por Mäklin, Tommi, Kallonen, Teemu, Alanko, Jarno, Samuelsen, Ørjan, Hegstad, Kristin, Mäkinen, Veli, Corander, Jukka, Heinz, Eva, Honkela, Antti
Publicado 2021

HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets

por Kirsch-Gerweck, Benedikt, Bohnenkämper, Leonard, Henrichs, Michel T, Alanko, Jarno N, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, Burger, Joachim, Stoye, Jens, Diekmann, Yoan
Publicado 2023