Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time

por Schmidt, Sebastian, Alanko, Jarno N.
Publicado 2023

Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time

por Schmidt, Sebastian, Alanko, Jarno N.
Publicado 2023

Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes

por Alanko, Jarno N, Vuohtoniemi, Jaakko, Mäklin, Tommi, Puglisi, Simon J
Publicado 2023

Matchtigs: minimum plain text representation of k-mer sets

por Schmidt, Sebastian, Khan, Shahbaz, Alanko, Jarno N., Pibiri, Giulio E., Tomescu, Alexandru I.
Publicado 2023

Syotti: scalable bait design for DNA enrichment

por Alanko, Jarno N, Slizovskiy, Ilya B, Lokshtanov, Daniel, Gagie, Travis, Noyes, Noelle R, Boucher, Christina
Publicado 2022

HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets

por Kirsch-Gerweck, Benedikt, Bohnenkämper, Leonard, Henrichs, Michel T, Alanko, Jarno N, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, Burger, Joachim, Stoye, Jens, Diekmann, Yoan
Publicado 2023