Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells

por Bakoulis, Stylianos, Krautz, Robert, Alcaraz, Nicolas, Salvatore, Marco, Andersson, Robin
Publicado 2022

Editorial: Computational systems biomedicine

por Batra, Richa, Baloni, Priyanka, Alcaraz, Nicolas, Hauschild, Anne-Christin, Cervera, Alejandra
Publicado 2022

De novo pathway-based biomarker identification

por Alcaraz, Nicolas, List, Markus, Batra, Richa, Vandin, Fabio, Ditzel, Henrik J., Baumbach, Jan
Publicado 2017

KeyPathwayMinerWeb: online multi-omics network enrichment

por List, Markus, Alcaraz, Nicolas, Dissing-Hansen, Martin, Ditzel, Henrik J., Mollenhauer, Jan, Baumbach, Jan
Publicado 2016

Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

por Einarsson, Hjörleifur, Salvatore, Marco, Vaagensø, Christian, Alcaraz, Nicolas, Bornholdt, Jette, Rennie, Sarah, Andersson, Robin
Publicado 2022

On the performance of de novo pathway enrichment

por Batra, Richa, Alcaraz, Nicolas, Gitzhofer, Kevin, Pauling, Josch, Ditzel, Henrik J., Hellmuth, Marc, Baumbach, Jan, List, Markus
Publicado 2017

Robust de novo pathway enrichment with KeyPathwayMiner 5

por Alcaraz, Nicolas, List, Markus, Dissing-Hansen, Martin, Rehmsmeier, Marc, Tan, Qihua, Mollenhauer, Jan, Ditzel, Henrik J., Baumbach, Jan
Publicado 2016

Recycling of modified H2A-H2B provides short-term memory of chromatin states

por Flury, Valentin, Reverón-Gómez, Nazaret, Alcaraz, Nicolas, Stewart-Morgan, Kathleen R., Wenger, Alice, Klose, Robert J., Groth, Anja
Publicado 2023

KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape

por Alcaraz, Nicolas, Pauling, Josch, Batra, Richa, Barbosa, Eudes, Junge, Alexander, Christensen, Anne GL, Azevedo, Vasco, Ditzel, Henrik J, Baumbach, Jan
Publicado 2014

Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection

por Salgado-Albarrán, Marisol, Navarro-Delgado, Erick I., Del Moral-Morales, Aylin, Alcaraz, Nicolas, Baumbach, Jan, González-Barrios, Rodrigo, Soto-Reyes, Ernesto
Publicado 2021

A functional genetic screen identifies the Mediator complex as essential for SSX2-induced senescence

por Brückmann, Nadine H., Bennedsen, Sofie N., Duijf, Pascal H. G., Terp, Mikkel G., Thomassen, Mads, Larsen, Martin, Pedersen, Christina B., Kruse, Torben, Alcaraz, Nicolas, Ditzel, Henrik J., Gjerstorff, Morten F.
Publicado 2019

Association of SLC12A1 and GLUR4 Ion Transporters with Neoadjuvant Chemoresistance in Luminal Locally Advanced Breast Cancer

por Justo-Garrido, Montserrat, López-Saavedra, Alejandro, Alcaraz, Nicolás, Cortés-González, Carlo C., Oñate-Ocaña, Luis F., Caro-Sánchez, Claudia Haydee Sarai, Castro-Hernández, Clementina, Arriaga-Canon, Cristian, Díaz-Chávez, José, Herrera, Luis A.
Publicado 2023

Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity

por Wenger, Alice, Biran, Alva, Alcaraz, Nicolas, Redó-Riveiro, Alba, Sell, Annika Charlotte, Krautz, Robert, Flury, Valentin, Reverón-Gómez, Nazaret, Solis-Mezarino, Victor, Völker-Albert, Moritz, Imhof, Axel, Andersson, Robin, Brickman, Joshua M., Groth, Anja
Publicado 2023

The epigenetic factor BORIS (CTCFL) controls the androgen receptor regulatory network in ovarian cancer

por Salgado-Albarrán, Marisol, González-Barrios, Rodrigo, Guerra-Calderas, Lissania, Alcaraz, Nicolás, Estefanía Sánchez-Correa, Thalía, Castro-Hernández, Clementina, Sánchez-Pérez, Yesennia, Aréchaga-Ocampo, Elena, García-Carrancá, Alejandro, Cantú de León, David, Herrera, Luis A., Baumbach, Jan, Soto-Reyes, Ernesto
Publicado 2019

CTCF-KDM4A complex correlates with histone modifications that negatively regulate CHD5 gene expression in cancer cell lines

por Guerra-Calderas, Lissania, González-Barrios, Rodrigo, Patiño, Carlos César, Alcaraz, Nicolás, Salgado-Albarrán, Marisol, de León, David Cantú, Hernández, Clementina Castro, Sánchez-Pérez, Yesennia, Maldonado-Martínez, Héctor Aquiles, De la Rosa-Velazquez, Inti A., Vargas-Romero, Fernanda, Herrera, Luis A., García-Carrancá, Alejandro, Soto-Reyes, Ernesto
Publicado 2018

Orthologous proteins of experimental de- and remyelination are differentially regulated in the CSF proteome of multiple sclerosis subtypes

por Martin, Nellie A., Nawrocki, Arkadiusz, Molnar, Viktor, Elkjaer, Maria L., Thygesen, Eva K., Palkovits, Miklos, Acs, Peter, Sejbaek, Tobias, Nielsen, Helle H., Hegedus, Zoltan, Sellebjerg, Finn, Molnar, Tihamer, Barbosa, Eudes G. V., Alcaraz, Nicolas, Gallyas, Ferenc, Svenningsen, Asa F., Baumbach, Jan, Lassmann, Hans, Larsen, Martin R., Illes, Zsolt
Publicado 2018

Genomic Profile in a Non-Seminoma Testicular Germ-Cell Tumor Cohort Reveals a Potential Biomarker of Sensitivity to Platinum-Based Therapy

por González-Barrios, Rodrigo, Alcaraz, Nicolás, Montalvo-Casimiro, Michel, Cervera, Alejandra, Arriaga-Canon, Cristian, Munguia-Garza, Paulina, Hinojosa-Ugarte, Diego, Sobrevilla-Moreno, Nora, Torres-Arciga, Karla, Mendoza-Perez, Julia, Diaz-Chavez, José, Cortes-González, Carlo Cesar, Castro-Hernández, Clementina, Martínez-Cedillo, Jorge, Scavuzzo, Ana, Pérez-Montiel, Delia, Jiménez-Ríos, Miguel A., Herrera, Luis A.
Publicado 2022

Proteasome inhibition alters mitotic progression through the upregulation of centromeric α‐Satellite RNAs

por Cáceres‐Gutiérrez, Rodrigo E., Andonegui, Marco A., Oliva‐Rico, Diego A., González‐Barrios, Rodrigo, Luna, Fernando, Arriaga‐Canon, Cristian, López‐Saavedra, Alejandro, Prada, Diddier, Castro, Clementina, Parmentier, Laurent, Díaz‐Chávez, José, Alfaro‐Mora, Yair, Navarro‐Delgado, Erick I., Fabian‐Morales, Eunice, Tran, Bao, Shetty, Jyoti, Zhao, Yongmei, Alcaraz, Nicolas, De la Rosa, Carlos, Reyes, José L., Hédouin, Sabrine, Hubé, Florent, Francastel, Claire, Herrera, Luis A.
Publicado 2021

The Evolutionary Landscape of SARS-CoV-2 Variant B.1.1.519 and Its Clinical Impact in Mexico City

por Cedro-Tanda, Alberto, Gómez-Romero, Laura, Alcaraz, Nicolás, de Anda-Jauregui, Guillermo, Peñaloza, Fernando, Moreno, Bernardo, Escobar-Arrazola, Marco A., Ramirez-Vega, Oscar A., Munguia-Garza, Paulina, Garcia-Cardenas, Francisco, Cisneros-Villanueva, Mireya, Moreno-Camacho, Jose L., Rodriguez-Gallegos, Jorge, Luna-Ruiz Esparza, Marco A., Fernández Rojas, Miguel A., Mendoza-Vargas, Alfredo, Reyes-Grajeda, Juan Pablo, Campos-Romero, Abraham, Angulo, Ofelia, Ruiz, Rosaura, Sheinbaum-Pardo, Claudia, Sifuentes-Osornio, José, Kershenobich, David, Hidalgo-Miranda, Alfredo, Herrera, Luis A.
Publicado 2021

Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico

por Rodríguez-Maldonado, Abril Paulina, Vázquez-Pérez, Joel Armando, Cedro-Tanda, Alberto, Taboada, Blanca, Boukadida, Celia, Wong-Arámbula, Claudia, Nuñez-García, Tatiana Ernestina, Cruz-Ortiz, Natividad, Barrera-Badillo, Gisela, Hernández-Rivas, Lucía, López-Martínez, Irma, Mendoza-Vargas, Alfredo, Reyes-Grajeda, Juan Pablo, Alcaraz, Nicolas, Peñaloza-Figueroa, Fernando, Gonzalez-Barrera, Dulibeth, Rangel-DeLeon, Daniel, Herrera-Montalvo, Luis Alonso, Mejía-Nepomuceno, Fidencio, Hernández-Terán, Alejandra, Mújica-Sánchez, Mario, Becerril-Vargas, Eduardo, Martínez-Orozco, José Arturo, Pérez-Padilla, Rogelio, Salas-Hernández, Jorge, Sanchez-Flores, Alejandro, Isa, Pavel, Matías-Florentino, Margarita, Ávila-Ríos, Santiago, Muñoz-Medina, José Esteban, Grajales-Muñiz, Concepción, Salas-Lais, Angel Gustavo, Santos Coy-Arechavaleta, Andrea, Hidalgo-Miranda, Alfredo, Arias, Carlos F., Ramírez-González, José Ernesto
Publicado 2021