Dynamical Model of Drug Accumulation in Bacteria: Sensitivity Analysis and Experimentally Testable Predictions

por Vesselinova, Neda, Alexandrov, Boian S., Wall, Michael E.
Publicado 2016

The role of structural parameters in DNA cyclization

por Alexandrov, Ludmil B., Bishop, Alan R., Rasmussen, Kim Ø., Alexandrov, Boian S.
Publicado 2016

Evaluating the role of coherent delocalized phonon-like modes in DNA cyclization

por Alexandrov, Ludmil B., Rasmussen, Kim Ø., Bishop, Alan R., Alexandrov, Boian S.
Publicado 2017

Nonnegative Matrix Factorization for identification of unknown number of sources emitting delayed signals

por Iliev, Filip L., Stanev, Valentin G., Vesselinov, Velimir V., Alexandrov, Boian S.
Publicado 2018

Nonnegative/Binary matrix factorization with a D-Wave quantum annealer

por O’Malley, Daniel, Vesselinov, Velimir V., Alexandrov, Boian S., Alexandrov, Ludmil B.
Publicado 2018

Quantum annealing algorithms for Boolean tensor networks

por Pelofske, Elijah, Hahn, Georg, O’Malley, Daniel, Djidjev, Hristo N., Alexandrov, Boian S.
Publicado 2022

Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter

por Alexandrov, Boian S., Gelev, Vladimir, Yoo, Sang Wook, Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2009

Examining DNA Breathing with pyDNA-EPBD

por Kabir, Anowarul, Bhattarai, Manish, Rasmussen, Kim Ø., Shehu, Amarda, Usheva, Anny, Bishop, Alan R, Alexandrov, Boian S
Publicado 2023

A nonlinear dynamic model of DNA with a sequence-dependent stacking term

por Alexandrov, Boian S., Gelev, Vladimir, Monisova, Yevgeniya, Alexandrov, Ludmil B., Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2009

DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells

por Alexandrov, Boian S., Fukuyo, Yayoi, Lange, Martin, Horikoshi, Nobuo, Gelev, Vladimir, Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2012

Impaired cardiac glycolysis and glycogen depletion are linked to poor myocardial outcomes in juvenile male swine with metabolic syndrome and ischemia

por Broadwin, Mark, Harris, Dwight D., Sabe, Sharif A., Sengun, Elif, Sylvestre, Amber J., Alexandrov, Boian S., Selke, Frank W., Usheva, Anny
Publicado 2023

DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation

por Alexandrov, Boian S., Gelev, Vladimir, Yoo, Sang Wook, Alexandrov, Ludmil B., Fukuyo, Yayoi, Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2010

Metabolomics and the pig model reveal aberrant cardiac energy metabolism in metabolic syndrome

por Karimi, Maryam, Petkova, Victoria, Asara, John M., Griffin, Michael J., Sellke, Frank W., Bishop, Alan R., Alexandrov, Boian S., Usheva, Anny
Publicado 2020

DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases

por Alexandrov, Boian S., Valtchinov, Vlad I., Alexandrov, Ludmil B., Gelev, Vladimir, Dagon, Yossi, Bock, Jonathan, Kohane, Isaac S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2011

Correction: DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases

por Alexandrov, Boian S., Valtchinov, Vlad I., Alexandrov, Ludmil B., Gelev, Vladimir, Dagon, Yossi, Bock, Jonathan, Kohane, Isaac S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2011

The cardiac molecular setting of metabolic syndrome in pigs reveals disease susceptibility and suggests mechanisms that exacerbate COVID-19 outcomes in patients

por Ziegler, Olivia, Sriram, Nivedita, Gelev, Vladimir, Radeva, Denitsa, Todorov, Kostadin, Feng, Jun, Sellke, Frank W., Robson, Simon C., Hiromura, Makoto, Alexandrov, Boian S., Usheva, Anny
Publicado 2021

Author Correction: The cardiac molecular setting of metabolic syndrome in pigs reveals disease susceptibility and suggests mechanisms that exacerbate COVID-19 outcomes in patients

por Ziegler, Olivia, Sriram, Nivedita, Gelev, Vladimir, Radeva, Denitsa, Todorov, Kostadin, Feng, Jun, Sellke, Frank W., Robson, Simon C., Hiromura, Makoto, Alexandrov, Boian S., Usheva, Anny
Publicado 2021

Conotoxin Prediction: New Features to Increase Prediction Accuracy

por Monroe, Lyman K., Truong, Duc P., Miner, Jacob C., Adikari, Samantha H., Sasiene, Zachary J., Fenimore, Paul W., Alexandrov, Boian, Williams, Robert F., Nguyen, Hau B.
Publicado 2023

Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics

por Nowak-Lovato, Kristy, Alexandrov, Ludmil B., Banisadr, Afsheen, Bauer, Amy L., Bishop, Alan R., Usheva, Anny, Mu, Fangping, Hong-Geller, Elizabeth, Rasmussen, Kim Ø., Hlavacek, William S., Alexandrov, Boian S.
Publicado 2013

Robust effect of metabolic syndrome on major metabolic pathways in the myocardium

por Karimi, Maryam, Pavlov, Vasile I., Ziegler, Olivia, Sriram, Nivedita, Yoon, Se-Young, Agbortoko, Vahid, Alexandrova, Stoiana, Asara, John, Sellke, Frank W., Sturek, Michael, Feng, Jun, Alexandrov, Boian S., Usheva, Anny
Publicado 2019