Bioinformatics and Machine Learning Approaches to Understand the Regulation of Mobile Genetic Elements

por Giassa, Ilektra-Chara, Alexiou, Panagiotis
Publicado 2021

Using Attribution Sequence Alignment to Interpret Deep Learning Models for miRNA Binding Site Prediction

por Grešová, Katarína, Vaculík, Ondřej, Alexiou, Panagiotis
Publicado 2023

Small RNA Targets: Advances in Prediction Tools and High-Throughput Profiling

por Grešová, Katarína, Alexiou, Panagiotis, Giassa, Ilektra-Chara
Publicado 2022

CLIPSeqTools—a novel bioinformatics CLIP-seq analysis suite

por Maragkakis, Manolis, Alexiou, Panagiotis, Nakaya, Tadashi, Mourelatos, Zissimos
Publicado 2016

Kc167, a widely used Drosophila cell line, contains an active primary piRNA pathway

por Vrettos, Nicholas, Maragkakis, Manolis, Alexiou, Panagiotis, Mourelatos, Zissimos
Publicado 2017

Ribothrypsis, a novel process of canonical mRNA decay, mediates ribosome-phased mRNA endonucleolysis

por Ibrahim, Fadia, Maragkakis, Manolis, Alexiou, Panagiotis, Mourelatos, Zissimos
Publicado 2018

PENGUINN: Precise Exploration of Nuclear G-Quadruplexes Using Interpretable Neural Networks

por Klimentova, Eva, Polacek, Jakub, Simecek, Petr, Alexiou, Panagiotis
Publicado 2020

Genomic benchmarks: a collection of datasets for genomic sequence classification

por Grešová, Katarína, Martinek, Vlastimil, Čechák, David, Šimeček, Petr, Alexiou, Panagiotis
Publicado 2023

Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes

por Vaculík, Ondřej, Chalupová, Eliška, Grešová, Katarína, Majtner, Tomáš, Alexiou, Panagiotis
Publicado 2023

Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm

por Vourekas, Anastassios, Alexiou, Panagiotis, Vrettos, Nicholas, Maragkakis, Manolis, Mourelatos, Zissimos
Publicado 2016

Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data

por Reczko, Martin, Maragkakis, Manolis, Alexiou, Panagiotis, Papadopoulos, Giorgio L., Hatzigeorgiou, Artemis G.
Publicado 2012

ENNGene: an Easy Neural Network model building tool for Genomics

por Chalupová, Eliška, Vaculík, Ondřej, Poláček, Jakub, Jozefov, Filip, Majtner, Tomáš, Alexiou, Panagiotis
Publicado 2022

miRBind: A Deep Learning Method for miRNA Binding Classification

por Klimentová, Eva, Hejret, Václav, Krčmář, Ján, Grešová, Katarína, Giassa, Ilektra-Chara, Alexiou, Panagiotis
Publicado 2022

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

por Martinek, Vlastimil, Martin, Jessica, Belair, Cedric, Payea, Matthew J, Malla, Sulochan, Alexiou, Panagiotis, Maragkakis, Manolis
Publicado 2023

The SAP domain of Ku facilitates its efficient loading onto DNA ends

por Fulneček, Jaroslav, Klimentová, Eva, Cairo, Albert, Bukovcakova, Sona Valuchova, Alexiou, Panagiotis, Prokop, Zbynek, Riha, Karel
Publicado 2023

The DIANA-mirExTra Web Server: From Gene Expression Data to MicroRNA Function

por Alexiou, Panagiotis, Maragkakis, Manolis, Papadopoulos, Giorgio L., Simmosis, Victor A., Zhang, Lin, Hatzigeorgiou, Artemis G.
Publicado 2010

Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis

por Vourekas, Anastassios, Zheng, Qi, Alexiou, Panagiotis, Maragkakis, Manolis, Kirino, Yohei, Gregory, Brian D., Mourelatos, Zissimos
Publicado 2012

Multi-branch Convolutional Neural Network for Identification of Small Non-coding RNA genomic loci

por Georgakilas, Georgios K., Grioni, Andrea, Liakos, Konstantinos G., Chalupova, Eliska, Plessas, Fotis C., Alexiou, Panagiotis
Publicado 2020

DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs

por Perdikopanis, Nikos, Georgakilas, Georgios K, Grigoriadis, Dimitris, Pierros, Vasilis, Kavakiotis, Ioannis, Alexiou, Panagiotis, Hatzigeorgiou, Artemis
Publicado 2020

Mitochondrial protein BmPAPI modulates the length of mature piRNAs

por Honda, Shozo, Kirino, Yoriko, Maragkakis, Manolis, Alexiou, Panagiotis, Ohtaki, Akashi, Murali, Ramachandran, Mourelatos, Zissimos, Kirino, Yohei
Publicado 2013