Comparative genomics as a tool to understand evolution and disease

por Alföldi, Jessica, Lindblad-Toh, Kerstin
Publicado 2013

An Improved microRNA Annotation of the Canine Genome

por Penso-Dolfin, Luca, Swofford, Ross, Johnson, Jeremy, Alföldi, Jessica, Lindblad-Toh, Kerstin, Swarbreck, David, Moxon, Simon, Di Palma, Federica
Publicado 2016

Human genetic variation alters CRISPR-Cas9 on- and off-targeting specificity at therapeutically implicated loci

por Lessard, Samuel, Francioli, Laurent, Alfoldi, Jessica, Tardif, Jean-Claude, Ellinor, Patrick T., MacArthur, Daniel G., Lettre, Guillaume, Orkin, Stuart H., Canver, Matthew C.
Publicado 2017

Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

por Eckalbar, Walter L, Hutchins, Elizabeth D, Markov, Glenn J, Allen, April N, Corneveaux, Jason J, Lindblad-Toh, Kerstin, Di Palma, Federica, Alföldi, Jessica, Huentelman, Matthew J, Kusumi, Kenro
Publicado 2013

The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations

por Keane, Michael, Craig, Thomas, Alföldi, Jessica, Berlin, Aaron M., Johnson, Jeremy, Seluanov, Andrei, Gorbunova, Vera, Di Palma, Federica, Lindblad-Toh, Kerstin, Church, George M., de Magalhães, João Pedro
Publicado 2014

Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes

por Wang, Qingbo, Pierce-Hoffman, Emma, Cummings, Beryl B., Alföldi, Jessica, Francioli, Laurent C., Gauthier, Laura D., Hill, Andrew J., O’Donnell-Luria, Anne H., Karczewski, Konrad J., MacArthur, Daniel G.
Publicado 2020

Author Correction: Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes

por Wang, Qingbo, Pierce-Hoffman, Emma, Cummings, Beryl B., Alföldi, Jessica, Francioli, Laurent C., Gauthier, Laura D., Hill, Andrew J., O’Donnell-Luria, Anne H., Karczewski, Konrad J., MacArthur, Daniel G.
Publicado 2021

Evaluating drug targets through human loss-of-function genetic variation

por Minikel, Eric Vallabh, Karczewski, Konrad J., Martin, Hilary C., Cummings, Beryl B., Whiffin, Nicola, Rhodes, Daniel, Alföldi, Jessica, Trembath, Richard C., van Heel, David A., Daly, Mark J., Schreiber, Stuart L., MacArthur, Daniel G.
Publicado 2020

Author Correction: Evaluating drug targets through human loss-of-function genetic variation

por Minikel, Eric Vallabh, Karczewski, Konrad J., Martin, Hilary C., Cummings, Beryl B., Whiffin, Nicola, Rhodes, Daniel, Alföldi, Jessica, Trembath, Richard C., van Heel, David A., Daly, Mark J., Schreiber, Stuart L., MacArthur, Daniel G.
Publicado 2021

Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis

por Pallavicini, Alberto, Canapa, Adriana, Barucca, Marco, Alfőldi, Jessica, Biscotti, Maria Assunta, Buonocore, Francesco, De Moro, Gianluca, Di Palma, Federica, Fausto, Anna Maria, Forconi, Mariko, Gerdol, Marco, Makapedua, Daisy Monica, Turner-Meier, Jason, Olmo, Ettore, Scapigliati, Giuseppe
Publicado 2013

The Antarctic Weddell seal genome reveals evidence of selection on cardiovascular phenotype and lipid handling

por Noh, Hyun Ji, Turner-Maier, Jason, Schulberg, S. Anne, Fitzgerald, Michael L., Johnson, Jeremy, Allen, Kaitlin N., Hückstädt, Luis A., Batten, Annabelle J., Alfoldi, Jessica, Costa, Daniel P., Karlsson, Elinor K., Zapol, Warren M., Buys, Emmanuel S., Lindblad-Toh, Kerstin, Hindle, Allyson G.
Publicado 2022

Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes

por Broeckx, Bart J.G., Hitte, Christophe, Coopman, Frank, Verhoeven, Geert E.C., De Keulenaer, Sarah, De Meester, Ellen, Derrien, Thomas, Alfoldi, Jessica, Lindblad-Toh, Kerstin, Bosmans, Tim, Gielen, Ingrid, Van Bree, Henri, Van Ryssen, Bernadette, Saunders, Jimmy H., Van Nieuwerburgh, Filip, Deforce, Dieter
Publicado 2015

Exome sequencing of lymphomas from three dog breeds reveals somatic mutation patterns reflecting genetic background

por Elvers, Ingegerd, Turner-Maier, Jason, Swofford, Ross, Koltookian, Michele, Johnson, Jeremy, Stewart, Chip, Zhang, Cheng-Zhong, Schumacher, Steven E., Beroukhim, Rameen, Rosenberg, Mara, Thomas, Rachael, Mauceli, Evan, Getz, Gad, Palma, Federica Di, Modiano, Jaime F., Breen, Matthew, Lindblad-Toh, Kerstin, Alföldi, Jessica
Publicado 2015

Transcript expression-aware annotation improves rare variant interpretation

por Cummings, Beryl B., Karczewski, Konrad J., Kosmicki, Jack A., Seaby, Eleanor G., Watts, Nicholas A., Singer-Berk, Moriel, Mudge, Jonathan M., Karjalainen, Juha, Satterstrom, F. Kyle, O’Donnell-Luria, Anne H., Poterba, Timothy, Seed, Cotton, Solomonson, Matthew, Alföldi, Jessica, Daly, Mark J., MacArthur, Daniel G.
Publicado 2020

Progressive Cactus is a multiple-genome aligner for the thousand-genome era

por Armstrong, Joel, Hickey, Glenn, Diekhans, Mark, Fiddes, Ian T., Novak, Adam M., Deran, Alden, Fang, Qi, Xie, Duo, Feng, Shaohong, Stiller, Josefin, Genereux, Diane, Johnson, Jeremy, Marinescu, Voichita Dana, Alföldi, Jessica, Harris, Robert S., Lindblad-Toh, Kerstin, Haussler, David, Karlsson, Elinor, Jarvis, Erich D., Zhang, Guojie, Paten, Benedict
Publicado 2020

Author Correction: Transcript expression-aware annotation improves rare variant interpretation

por Cummings, Beryl B., Karczewski, Konrad J., Kosmicki, Jack A., Seaby, Eleanor G., Watts, Nicholas A., Singer-Berk, Moriel, Mudge, Jonathan M., Karjalainen, Juha, Satterstrom, F. Kyle, O’Donnell-Luria, Anne H., Poterba, Timothy, Seed, Cotton, Solomonson, Matthew, Alföldi, Jessica, Daly, Mark J., MacArthur, Daniel G.
Publicado 2021

FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

por Wucher, Valentin, Legeai, Fabrice, Hédan, Benoît, Rizk, Guillaume, Lagoutte, Lætitia, Leeb, Tosso, Jagannathan, Vidhya, Cadieu, Edouard, David, Audrey, Lohi, Hannes, Cirera, Susanna, Fredholm, Merete, Botherel, Nadine, Leegwater, Peter A.J., Le Béguec, Céline, Fieten, Hille, Johnson, Jeremy, Alföldi, Jessica, André, Catherine, Lindblad-Toh, Kerstin, Hitte, Christophe, Derrien, Thomas
Publicado 2017

Characterising the loss-of-function impact of 5’ untranslated region variants in 15,708 individuals

por Whiffin, Nicola, Karczewski, Konrad J., Zhang, Xiaolei, Chothani, Sonia, Smith, Miriam J., Evans, D. Gareth, Roberts, Angharad M., Quaife, Nicholas M., Schafer, Sebastian, Rackham, Owen, Alföldi, Jessica, O’Donnell-Luria, Anne H., Francioli, Laurent C., Cook, Stuart A., Barton, Paul J. R., MacArthur, Daniel G., Ware, James S.
Publicado 2020

Author Correction: Characterising the loss-of-function impact of 5’ untranslated region variants in 15,708 individuals

por Whiffin, Nicola, Karczewski, Konrad J., Zhang, Xiaolei, Chothani, Sonia, Smith, Miriam J., Evans, D. Gareth, Roberts, Angharad M., Quaife, Nicholas M., Schafer, Sebastian, Rackham, Owen, Alföldi, Jessica, O’Donnell-Luria, Anne H., Francioli, Laurent C., Cook, Stuart A., Barton, Paul J. R., MacArthur, Daniel G., Ware, James S.
Publicado 2021

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

por Hoeppner, Marc P., Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R. S., Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G., Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J. Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S., di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G.
Publicado 2014