Assessing the State of Substitution Models Describing Noncoding RNA Evolution

por Allen, James E., Whelan, Simon
Publicado 2014

K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes

por Contreras-Moreira, Bruno, Filippi, Carla V, Naamati, Guy, Girón, Carlos García, Allen, James E, Flicek, Paul
Publicado 2021

Scripting Analyses of Genomes in Ensembl Plants

por Contreras-Moreira, Bruno, Naamati, Guy, Rosello, Marc, Allen, James E., Hunt, Sarah E., Muffato, Matthieu, Gall, Astrid, Flicek, Paul
Publicado 2022

T1DBase: integration and presentation of complex data for type 1 diabetes research

por Hulbert, Erin M., Smink, Luc J., Adlem, Ellen C., Allen, James E., Burdick, David B., Burren, Oliver S., Cavnor, Christopher C., Dolman, Geoffrey E., Flamez, Daisy, Friery, Karen F., Healy, Barry C., Killcoyne, Sarah A., Kutlu, Burak, Schuilenburg, Helen, Walker, Neil M., Mychaleckyj, Josyf, Eizirik, Decio L., Wicker, Linda S., Todd, John A., Goodman, Nathan
Publicado 2007

Ensembl Genomes 2013: scaling up access to genome-wide data

por Kersey, Paul Julian, Allen, James E., Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Hughes, Daniel Seth Toney, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Langridge, Nicholas, McDowall, Mark D., Maheswari, Uma, Maslen, Gareth, Nuhn, Michael, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Tuli, Mary Ann, Walts, Brandon, Williams, Gareth, Wilson, Derek, Youens-Clark, Ken, Monaco, Marcela K., Stein, Joshua, Wei, Xuehong, Ware, Doreen, Bolser, Daniel M., Howe, Kevin Lee, Kulesha, Eugene, Lawson, Daniel, Staines, Daniel Michael
Publicado 2014

Ensembl Genomes 2016: more genomes, more complexity

por Kersey, Paul Julian, Allen, James E., Armean, Irina, Boddu, Sanjay, Bolt, Bruce J., Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Aranganathan, Naveen K., Langridge, Nicholas, Lowy, Ernesto, McDowall, Mark D., Maheswari, Uma, Nuhn, Michael, Ong, Chuang Kee, Overduin, Bert, Paulini, Michael, Pedro, Helder, Perry, Emily, Spudich, Giulietta, Tapanari, Electra, Walts, Brandon, Williams, Gareth, Tello–Ruiz, Marcela, Stein, Joshua, Wei, Sharon, Ware, Doreen, Bolser, Daniel M., Howe, Kevin L., Kulesha, Eugene, Lawson, Daniel, Maslen, Gareth, Staines, Daniel M.
Publicado 2016

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

por Kersey, Paul Julian, Allen, James E, Allot, Alexis, Barba, Matthieu, Boddu, Sanjay, Bolt, Bruce J, Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Grabmueller, Christoph, Kumar, Navin, Liu, Zicheng, Maurel, Thomas, Moore, Ben, McDowall, Mark D, Maheswari, Uma, Naamati, Guy, Newman, Victoria, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Perry, Emily, Russell, Matthew, Sparrow, Helen, Tapanari, Electra, Taylor, Kieron, Vullo, Alessandro, Williams, Gareth, Zadissia, Amonida, Olson, Andrew, Stein, Joshua, Wei, Sharon, Tello-Ruiz, Marcela, Ware, Doreen, Luciani, Aurelien, Potter, Simon, Finn, Robert D, Urban, Martin, Hammond-Kosack, Kim E, Bolser, Dan M, De Silva, Nishadi, Howe, Kevin L, Langridge, Nicholas, Maslen, Gareth, Staines, Daniel Michael, Yates, Andrew
Publicado 2018

Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes

por Attardo, Geoffrey M., Abd-Alla, Adly M. M., Acosta-Serrano, Alvaro, Allen, James E., Bateta, Rosemary, Benoit, Joshua B., Bourtzis, Kostas, Caers, Jelle, Caljon, Guy, Christensen, Mikkel B., Farrow, David W., Friedrich, Markus, Hua-Van, Aurélie, Jennings, Emily C., Larkin, Denis M., Lawson, Daniel, Lehane, Michael J., Lenis, Vasileios P., Lowy-Gallego, Ernesto, Macharia, Rosaline W., Malacrida, Anna R., Marco, Heather G., Masiga, Daniel, Maslen, Gareth L., Matetovici, Irina, Meisel, Richard P., Meki, Irene, Michalkova, Veronika, Miller, Wolfgang J., Minx, Patrick, Mireji, Paul O., Ometto, Lino, Parker, Andrew G., Rio, Rita, Rose, Clair, Rosendale, Andrew J., Rota-Stabelli, Omar, Savini, Grazia, Schoofs, Liliane, Scolari, Francesca, Swain, Martin T., Takáč, Peter, Tomlinson, Chad, Tsiamis, George, Van Den Abbeele, Jan, Vigneron, Aurelien, Wang, Jingwen, Warren, Wesley C., Waterhouse, Robert M., Weirauch, Matthew T., Weiss, Brian L., Wilson, Richard K., Zhao, Xin, Aksoy, Serap
Publicado 2019

Ensembl 2022

por Cunningham, Fiona, Allen, James E, Allen, Jamie, Alvarez-Jarreta, Jorge, Amode, M Ridwan, Armean, Irina M, Austine-Orimoloye, Olanrewaju, Azov, Andrey G, Barnes, If, Bennett, Ruth, Berry, Andrew, Bhai, Jyothish, Bignell, Alexandra, Billis, Konstantinos, Boddu, Sanjay, Brooks, Lucy, Charkhchi, Mehrnaz, Cummins, Carla, Da Rin Fioretto, Luca, Davidson, Claire, Dodiya, Kamalkumar, Donaldson, Sarah, El Houdaigui, Bilal, El Naboulsi, Tamara, Fatima, Reham, Giron, Carlos Garcia, Genez, Thiago, Martinez, Jose Gonzalez, Guijarro-Clarke, Cristina, Gymer, Arthur, Hardy, Matthew, Hollis, Zoe, Hourlier, Thibaut, Hunt, Toby, Juettemann, Thomas, Kaikala, Vinay, Kay, Mike, Lavidas, Ilias, Le, Tuan, Lemos, Diana, Marugán, José Carlos, Mohanan, Shamika, Mushtaq, Aleena, Naven, Marc, Ogeh, Denye N, Parker, Anne, Parton, Andrew, Perry, Malcolm, Piližota, Ivana, Prosovetskaia, Irina, Sakthivel, Manoj Pandian, Salam, Ahamed Imran Abdul, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Pérez-Silva, José G, Stark, William, Steed, Emily, Sutinen, Kyösti, Sukumaran, Ranjit, Sumathipala, Dulika, Suner, Marie-Marthe, Szpak, Michal, Thormann, Anja, Tricomi, Francesca Floriana, Urbina-Gómez, David, Veidenberg, Andres, Walsh, Thomas A, Walts, Brandon, Willhoft, Natalie, Winterbottom, Andrea, Wass, Elizabeth, Chakiachvili, Marc, Flint, Bethany, Frankish, Adam, Giorgetti, Stefano, Haggerty, Leanne, Hunt, Sarah E, IIsley, Garth R, Loveland, Jane E, Martin, Fergal J, Moore, Benjamin, Mudge, Jonathan M, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Tate, John, Thybert, David, Trevanion, Stephen J, Dyer, Sarah, Harrison, Peter W, Howe, Kevin L, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul
Publicado 2021