No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease

por Alquicira‐Hernandez, José, Powell, Joseph E, Phan, Tri Giang
Publicado 2021

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

por Alquicira-Hernandez, Jose, Sathe, Anuja, Ji, Hanlee P., Nguyen, Quan, Powell, Joseph E.
Publicado 2019

Benchmarking of cell type deconvolution pipelines for transcriptomics data

por Avila Cobos, Francisco, Alquicira-Hernandez, José, Powell, Joseph E., Mestdagh, Pieter, De Preter, Katleen
Publicado 2020

Author Correction: Benchmarking of cell type deconvolution pipelines for transcriptomics data

por Cobos, Francisco Avila, Alquicira-Hernandez, José, Powell, Joseph E., Mestdagh, Pieter, De Preter, Katleen
Publicado 2020

DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets

por Wilson, Sean B., Howden, Sara E., Vanslambrouck, Jessica M., Dorison, Aude, Alquicira-Hernandez, Jose, Powell, Joseph E., Little, Melissa H.
Publicado 2022

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

por Nellore, Abhinav, Jaffe, Andrew E., Fortin, Jean-Philippe, Alquicira-Hernández, José, Collado-Torres, Leonardo, Wang, Siruo, Phillips III, Robert A., Karbhari, Nishika, Hansen, Kasper D., Langmead, Ben, Leek, Jeffrey T.
Publicado 2016

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

por Kang, Joyce B., Shen, Amber Z., Sakaue, Saori, Luo, Yang, Gurajala, Saisriram, Nathan, Aparna, Rumker, Laurie, Aguiar, Vitor R. C., Valencia, Cristian, Lagattuta, Kaitlyn, Zhang, Fan, Jonsson, Anna Helena, Yazar, Seyhan, Alquicira-Hernandez, Jose, Khalili, Hamed, Ananthakrishnan, Ashwin N., Jagadeesh, Karthik, Dey, Kushal, Daly, Mark J., Xavier, Ramnik J., Donlin, Laura T., Anolik, Jennifer H., Powell, Joseph E., Rao, Deepak A., Brenner, Michael B., Gutierrez-Arcelus, Maria, Raychaudhuri, Soumya
Publicado 2023

Tracking the clonal dynamics of SARS-CoV-2-specific T cells in children and adults with mild/asymptomatic COVID-19

por Khoo, Weng Hua, Jackson, Katherine, Phetsouphanh, Chansavath, Zaunders, John J., Alquicira-Hernandez, José, Yazar, Seyhan, Ruiz-Diaz, Stephanie, Singh, Mandeep, Dhenni, Rama, Kyaw, Wunna, Tea, Fiona, Merheb, Vera, Lee, Fiona X.Z., Burrell, Rebecca, Howard-Jones, Annaleise, Koirala, Archana, Zhou, Li, Yuksel, Aysen, Catchpoole, Daniel R., Lai, Catherine L., Vitagliano, Tennille L., Rouet, Romain, Christ, Daniel, Tang, Benjamin, West, Nicholas P., George, Shane, Gerrard, John, Croucher, Peter I., Kelleher, Anthony D., Goodnow, Christopher G., Sprent, Jonathan D., Powell, Joseph E., Brilot, Fabienne, Nanan, Ralph, Hsu, Peter S., Deenick, Elissa K., Britton, Philip N., Phan, Tri Giang
Publicado 2023