Model based analysis of real-time PCR data from DNA binding dye protocols

por Alvarez, Mariano J, Vila-Ortiz, Guillermo J, Salibe, Mariano C, Podhajcer, Osvaldo L, Pitossi, Fernando J
Publicado 2007

Network-based inference of protein activity helps functionalize the genetic landscape of cancer

por Alvarez, Mariano J., Shen, Yao, Giorgi, Federico M., Lachmann, Alexander, Ding, B. Belinda, Ye, B. Hilda, Califano, Andrea
Publicado 2016

PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens

por Bush, Erin C., Ray, Forest, Alvarez, Mariano J., Realubit, Ronald, Li, Hai, Karan, Charles, Califano, Andrea, Sims, Peter A.
Publicado 2017

Systematic, network-based characterization of therapeutic target inhibitors

por Shen, Yao, Alvarez, Mariano J., Bisikirska, Brygida, Lachmann, Alexander, Realubit, Ronald, Pampou, Sergey, Coku, Jorida, Karan, Charles, Califano, Andrea
Publicado 2017

SPARC Controls Melanoma Cell Plasticity through Rac1

por Salvatierra, Edgardo, Alvarez, Mariano J., Leishman, Claudia C., Rivas Baquero, Elvia, Lutzky, Viviana P., Chuluyan, H. Eduardo, Podhajcer, Osvaldo L.
Publicado 2015

The Host Cell ViroCheckpoint: Identification and Pharmacologic Targeting of Novel Mechanistic Determinants of Coronavirus-Mediated Hijacked Cell States

por Laise, Pasquale, Bosker, Gideon, Sun, Xiaoyun, Shen, Yao, Douglass, Eugene F., Karan, Charles, Realubit, Ronald B., Pampou, Sergey, Califano, Andrea, Alvarez, Mariano J.
Publicado 2020

Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm

por Ding, Hongxu, Douglass, Eugene F., Sonabend, Adam M., Mela, Angeliki, Bose, Sayantan, Gonzalez, Christian, Canoll, Peter D., Sims, Peter A., Alvarez, Mariano J., Califano, Andrea
Publicado 2018

Identification of Neurodegenerative Factors Using Translatome-Regulatory Network Analysis

por Brichta, Lars, Shin, William, Jackson-Lewis, Vernice, Blesa, Javier, Yap, Ee-Lynn, Walker, Zachary, Zhang, Jack, Roussarie, Jean-Pierre, Alvarez, Mariano J., Califano, Andrea, Przedborski, Serge, Greengard, Paul
Publicado 2015

Genome-wide Identification of Post-translational Modulators of Transcription Factor Activity in Human B-Cells

por Wang, Kai, Saito, Masumichi, Bisikirska, Brygida C., Alvarez, Mariano J., Lim, Wei Keat, Rajbhandari, Presha, Shen, Qiong, Nemenman, Ilya, Basso, Katia, Margolin, Adam A., Klein, Ulf, Dalla-Favera, Riccardo, Califano, Andrea
Publicado 2009

A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers

por Lefebvre, Celine, Rajbhandari, Presha, Alvarez, Mariano J, Bandaru, Pradeep, Lim, Wei Keat, Sato, Mai, Wang, Kai, Sumazin, Pavel, Kustagi, Manjunath, Bisikirska, Brygida C, Basso, Katia, Beltrao, Pedro, Krogan, Nevan, Gautier, Jean, Dalla-Favera, Riccardo, Califano, Andrea
Publicado 2010

A model for network-based identification and pharmacological targeting of aberrant, replication-permissive transcriptional programs induced by viral infection

por Laise, Pasquale, Stanifer, Megan L., Bosker, Gideon, Sun, Xiaoyun, Triana, Sergio, Doldan, Patricio, La Manna, Federico, De Menna, Marta, Realubit, Ronald B., Pampou, Sergey, Karan, Charles, Alexandrov, Theodore, Kruithof-de Julio, Marianna, Califano, Andrea, Boulant, Steeve, Alvarez, Mariano J.
Publicado 2022

A model for network-based identification and pharmacological targeting of aberrant, replication-permissive transcriptional programs induced by viral infection

por Laise, Pasquale, Stanifer, Megan L., Bosker, Gideon, Sun, Xiaoyun, Triana, Sergio, Doldan, Patricio, La Manna, Federico, De Menna, Marta, Realubit, Ronald B., Pampou, Sergey, Karan, Charles, Alexandrov, Theodore, Kruithof-de Julio, Marianna, Califano, Andrea, Boulant, Steeve, Alvarez, Mariano J.
Publicado 2022

A case study of an integrative genomic and experimental therapeutic approach for rare tumors: identification of vulnerabilities in a pediatric poorly differentiated carcinoma

por Dela Cruz, Filemon S., Diolaiti, Daniel, Turk, Andrew T., Rainey, Allison R., Ambesi-Impiombato, Alberto, Andrews, Stuart J., Mansukhani, Mahesh M., Nagy, Peter L., Alvarez, Mariano J., Califano, Andrea, Forouhar, Farhad, Modzelewski, Beata, Mitchell, Chelsey M., Yamashiro, Darrell J., Marks, Lianna J., Bender, Julia L. Glade, Kung, Andrew L.
Publicado 2016

A Phase II Study of the Efficacy and Safety of Oral Selinexor in Recurrent Glioblastoma

por Lassman, Andrew B., Wen, Patrick Y., van den Bent, Martin J., Plotkin, Scott R., Walenkamp, Annemiek M.E., Green, Adam L., Li, Kai, Walker, Christopher J., Chang, Hua, Tamir, Sharon, Henegar, Leah, Shen, Yao, Alvarez, Mariano J., Califano, Andrea, Landesman, Yosef, Kauffman, Michael G., Shacham, Sharon, Mau-Sørensen, Morten
Publicado 2022

Systematic elucidation of neuron-astrocyte interaction in models of amyotrophic lateral sclerosis using multi-modal integrated bioinformatics workflow

por Mishra, Vartika, Re, Diane B., Le Verche, Virginia, Alvarez, Mariano J., Vasciaveo, Alessandro, Jacquier, Arnaud, Doulias, Paschalis-Tomas, Greco, Todd M., Nizzardo, Monica, Papadimitriou, Dimitra, Nagata, Tetsuya, Rinchetti, Paola, Perez-Torres, Eduardo J., Politi, Kristin A., Ikiz, Burcin, Clare, Kevin, Than, Manuel E., Corti, Stefania, Ischiropoulos, Harry, Lotti, Francesco, Califano, Andrea, Przedborski, Serge
Publicado 2020

Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer

por Risom, Tyler, Langer, Ellen M., Chapman, Margaret P., Rantala, Juha, Fields, Andrew J., Boniface, Christopher, Alvarez, Mariano J., Kendsersky, Nicholas D., Pelz, Carl R., Johnson-Camacho, Katherine, Dobrolecki, Lacey E., Chin, Koei, Aswani, Anil J., Wang, Nicholas J., Califano, Andrea, Lewis, Michael T., Tomlin, Claire J., Spellman, Paul T., Adey, Andrew, Gray, Joe W., Sears, Rosalie C.
Publicado 2018

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling

por Bilal, Erhan, Dutkowski, Janusz, Guinney, Justin, Jang, In Sock, Logsdon, Benjamin A., Pandey, Gaurav, Sauerwine, Benjamin A., Shimoni, Yishai, Moen Vollan, Hans Kristian, Mecham, Brigham H., Rueda, Oscar M., Tost, Jorg, Curtis, Christina, Alvarez, Mariano J., Kristensen, Vessela N., Aparicio, Samuel, Børresen-Dale, Anne-Lise, Caldas, Carlos, Califano, Andrea, Friend, Stephen H., Ideker, Trey, Schadt, Eric E., Stolovitzky, Gustavo A., Margolin, Adam A.
Publicado 2013