The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae

por Reim, Natalia I, Chuang, James, Jain, Dhawal, Alver, Burak H, Park, Peter J, Winston, Fred
Publicado 2020

HiNT: a computational method for detecting copy number variations and translocations from Hi-C data

por Wang, Su, Lee, Soohyun, Chu, Chong, Jain, Dhawal, Kerpedjiev, Peter, Nelson, Geoffrey M., Walsh, Jennifer M., Alver, Burak H., Park, Peter J.
Publicado 2020

Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming

por West, Jason A., Cook, April, Alver, Burak H., Stadtfeld, Matthias, Deaton, Aimee M., Hochedlinger, Konrad, Park, Peter J., Tolstorukov, Michael Y., Kingston, Robert E.
Publicado 2014

The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers

por Alver, Burak H., Kim, Kimberly H., Lu, Ping, Wang, Xiaofeng, Manchester, Haley E., Wang, Weishan, Haswell, Jeffrey R., Park, Peter J., Roberts, Charles W. M.
Publicado 2017

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

por Mieczkowski, Jakub, Cook, April, Bowman, Sarah K., Mueller, Britta, Alver, Burak H., Kundu, Sharmistha, Deaton, Aimee M., Urban, Jennifer A., Larschan, Erica, Park, Peter J., Kingston, Robert E., Tolstorukov, Michael Y.
Publicado 2016

HiGlass: web-based visual exploration and analysis of genome interaction maps

por Kerpedjiev, Peter, Abdennur, Nezar, Lekschas, Fritz, McCallum, Chuck, Dinkla, Kasper, Strobelt, Hendrik, Luber, Jacob M., Ouellette, Scott B., Azhir, Alaleh, Kumar, Nikhil, Hwang, Jeewon, Lee, Soohyun, Alver, Burak H., Pfister, Hanspeter, Mirny, Leonid A., Park, Peter J., Gehlenborg, Nils
Publicado 2018

SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation

por Wang, Xiaofeng, Lee, Ryan S., Alver, Burak H., Haswell, Jeffrey R., Wang, Su, Mieczkowski, Jakub, Drier, Yotam, Gillespie, Shawn M., Archer, Tenley C., Wu, Jennifer N., Tzvetkov, Evgeni P., Troisi, Emma C., Pomeroy, Scott L., Biegel, Jaclyn A., Tolstorukov, Michael Y., Bernstein, Bradley E., Park, Peter J., Roberts, Charles W. M.
Publicado 2016

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

por Reiff, Sarah B., Schroeder, Andrew J., Kırlı, Koray, Cosolo, Andrea, Bakker, Clara, Mercado, Luisa, Lee, Soohyun, Veit, Alexander D., Balashov, Alexander K., Vitzthum, Carl, Ronchetti, William, Pitman, Kent M., Johnson, Jeremy, Ehmsen, Shannon R., Kerpedjiev, Peter, Abdennur, Nezar, Imakaev, Maxim, Öztürk, Serkan Utku, Çamoğlu, Uğur, Mirny, Leonid A., Gehlenborg, Nils, Alver, Burak H., Park, Peter J.
Publicado 2022

Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

por Reiff, Sarah B., Schroeder, Andrew J., Kırlı, Koray, Cosolo, Andrea, Bakker, Clara, Mercado, Luisa, Lee, Soohyun, Veit, Alexander D., Balashov, Alexander K., Vitzthum, Carl, Ronchetti, William, Pitman, Kent M., Johnson, Jeremy, Ehmsen, Shannon R., Kerpedjiev, Peter, Abdennur, Nezar, Imakaev, Maxim, Öztürk, Serkan Utku, Çamoğlu, Uğur, Mirny, Leonid A., Gehlenborg, Nils, Alver, Burak H., Park, Peter J.
Publicado 2022

Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

por Rigano, Alessandro, Ehmsen, Shannon, Öztürk, Serkan Utku, Ryan, Joel, Balashov, Alexander, Hammer, Mathias, Kirli, Koray, Boehm, Ulrike, Brown, Claire M., Bellve, Karl, Chambers, James J., Cosolo, Andrea, Coleman, Robert A., Faklaris, Orestis, Fogarty, Kevin E., Guilbert, Thomas, Hamacher, Anna B., Itano, Michelle S., Keeley, Daniel P., Kunis, Susanne, Lacoste, Judith, Laude, Alex, Ma, Willa Y., Marcello, Marco, Montero-Llopis, Paula, Nelson, Glyn, Nitschke, Roland, Pimentel, Jaime A., Weidtkamp-Peters, Stefanie, Park, Peter J., Alver, Burak H., Grunwald, David, Strambio-De-Castillia, Caterina
Publicado 2021

Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

por Rigano, Alessandro, Ehmsen, Shannon, Öztürk, Serkan Utku, Ryan, Joel, Balashov, Alexander, Hammer, Mathias, Kirli, Koray, Boehm, Ulrike, Brown, Claire M., Bellve, Karl, Chambers, James J., Cosolo, Andrea, Coleman, Robert A., Faklaris, Orestis, Fogarty, Kevin E., Guilbert, Thomas, Hamacher, Anna B., Itano, Michelle S., Keeley, Daniel P., Kunis, Susanne, Lacoste, Judith, Laude, Alex, Ma, Willa Y., Marcello, Marco, Montero-Llopis, Paula, Nelson, Glyn, Nitschke, Roland, Pimentel, Jaime A., Weidtkamp-Peters, Stefanie, Park, Peter J., Alver, Burak H., Grunwald, David, Strambio-De-Castillia, Caterina
Publicado 2021

Comparative Analysis of the Transcriptome across Distant Species

por Gerstein, Mark B., Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B., Davis, Carrie A, Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O., Duff, Michael O., Djebali, Sarah, Alexander, Roger P., Alver, Burak H., Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J., Boeck, Max E., Boley, Nathan P., Booth, Benjamin W., Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A., Frankish, Adam, Gao, Guanjun, Good, Peter J., Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A., Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P., Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C., Kitchen, Robert R., Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M., Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter J., Pazin, Michael J., Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I., Schlesinger, Felix, Sethi, Anurag, Slack, Frank J., Spencer, William C., Stoiber, Marcus H., Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A., Wan, Kenneth H., Wang, Guilin, Wang, Huaien, Watkins, Kathie L., Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E., Graveley, Brenton R., Celniker, Susan E., Gingeras, Thomas R, Waterston, Robert
Publicado 2014