Extending Ripley’s K-Function to Quantify Aggregation in 2-D Grayscale Images

por Amgad, Mohamed, Itoh, Anri, Tsui, Marco Man Kin
Publicado 2015

Medical Student Research: An Integrated Mixed-Methods Systematic Review and Meta-Analysis

por Amgad, Mohamed, Man Kin Tsui, Marco, Liptrott, Sarah J., Shash, Emad
Publicado 2015

Vectors for Genetically-Encoded Tags for Electron Microscopy Contrast in Drosophila

por Tsui, Marco Man Kin, Itoh, Anri, Amgad, Mohamed, Wang, Shao-Fang, Sasaki, Toshio
Publicado 2016

High expression of MKK3 is associated with worse clinical outcomes in African American breast cancer patients

por Yang, Xuan, Amgad, Mohamed, Cooper, Lee A. D., Du, Yuhong, Fu, Haian, Ivanov, Andrey A.
Publicado 2020

Image Analysis Pipeline for Renal Allograft Evaluation and Fibrosis Quantification

por Farris, Alton Brad, Vizcarra, Juan, Amgad, Mohamed, Donald Cooper, Lee Alex, Gutman, David, Hogan, Julien
Publicado 2021

Management of Low and Intermediate Risk Adult Rhabdomyosarcoma: A Pooled Survival Analysis of 553 Patients

por Elsebaie, Maha A. T., Amgad, Mohamed, Elkashash, Ahmed, Elgebaly, Ahmed Saber, Ashal, Gehad Gamal E. l., Shash, Emad, Elsayed, Zeinab
Publicado 2018

Publisher Correction: Management of Low and Intermediate Risk Adult Rhabdomyosarcoma: A Pooled Survival Analysis of 553 Patients

por Elsebaie, Maha A. T., Amgad, Mohamed, Elkashash, Ahmed, Elgebaly, Ahmed Saber, Ashal, Gehad Gamal E. l., Shash, Emad, Elsayed, Zeinab
Publicado 2018

Learning from crowds in digital pathology using scalable variational Gaussian processes

por López-Pérez, Miguel, Amgad, Mohamed, Morales-Álvarez, Pablo, Ruiz, Pablo, Cooper, Lee A. D., Molina, Rafael, Katsaggelos, Aggelos K.
Publicado 2021

A population-level computational histologic signature for invasive breast cancer prognosis

por Amgad, Mohamed, Hodge, James, Elsebaie, Maha, Bodelon, Clara, Puvanesarajah, Samantha, Gutman, David, Siziopikou, Kalliopi, Goldstein, Jeffery, Gaudet, Mia, Teras, Lauren, Cooper, Lee
Publicado 2023

Machine-Based Detection and Classification for Bone Marrow Aspirate Differential Counts: Initial Development Focusing on Non-Neoplastic Cells

por Chandradevan, Ramraj, Aljudi, Ahmed A., Drumheller, Bradley R., Kunananthaseelan, Nilakshan, Amgad, Mohamed, Gutman, David A., Cooper, Lee A.D., Jaye, David L.
Publicado 2019

Proteomic Profiling of Small-Cell Lung Cancer: A Systematic Review

por Elshoeibi, Amgad Mohamed, Elsayed, Basel, Kaleem, Muhammad Zain, Elhadary, Mohamed Ragab, Abu-Haweeleh, Mohannad Natheef, Haithm, Yunes, Krzyslak, Hubert, Vranic, Semir, Pedersen, Shona
Publicado 2023

Interactive phenotyping of large-scale histology imaging data with HistomicsML

por Nalisnik, Michael, Amgad, Mohamed, Lee, Sanghoon, Halani, Sameer H., Velazquez Vega, Jose Enrique, Brat, Daniel J., Gutman, David A., Cooper, Lee A. D.
Publicado 2017

Predicting cancer outcomes from histology and genomics using convolutional networks

por Mobadersany, Pooya, Yousefi, Safoora, Amgad, Mohamed, Gutman, David A., Barnholtz-Sloan, Jill S., Velázquez Vega, José E., Brat, Daniel J., Cooper, Lee A. D.
Publicado 2018

Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models

por Yousefi, Safoora, Amrollahi, Fatemeh, Amgad, Mohamed, Dong, Chengliang, Lewis, Joshua E., Song, Congzheng, Gutman, David A., Halani, Sameer H., Velazquez Vega, Jose Enrique, Brat, Daniel J., Cooper, Lee A. D.
Publicado 2017

Pilot study to evaluate tools to collect pathologist annotations for validating machine learning algorithms

por Elfer, Katherine, Dudgeon, Sarah, Garcia, Victor, Blenman, Kim, Hytopoulos, Evangelos, Wen, Si, Li, Xiaoxian, Ly, Amy, Werness, Bruce, Sheth, Manasi S., Amgad, Mohamed, Gupta, Rajarsi, Saltz, Joel, Hanna, Matthew G., Ehinger, Anna, Peeters, Dieter, Salgado, Roberto, Gallas, Brandon D.
Publicado 2022

A Pathologist-Annotated Dataset for Validating Artificial Intelligence: A Project Description and Pilot Study

por Dudgeon, Sarah N., Wen, Si, Hanna, Matthew G., Gupta, Rajarsi, Amgad, Mohamed, Sheth, Manasi, Marble, Hetal, Huang, Richard, Herrmann, Markus D., Szu, Clifford H., Tong, Darick, Werness, Bruce, Szu, Evan, Larsimont, Denis, Madabhushi, Anant, Hytopoulos, Evangelos, Chen, Weijie, Singh, Rajendra, Hart, Steven N., Sharma, Ashish, Saltz, Joel, Salgado, Roberto, Gallas, Brandon D.
Publicado 2021

Structured crowdsourcing enables convolutional segmentation of histology images

por Amgad, Mohamed, Elfandy, Habiba, Hussein, Hagar, Atteya, Lamees A, Elsebaie, Mai A T, Abo Elnasr, Lamia S, Sakr, Rokia A, Salem, Hazem S E, Ismail, Ahmed F, Saad, Anas M, Ahmed, Joumana, Elsebaie, Maha A T, Rahman, Mustafijur, Ruhban, Inas A, Elgazar, Nada M, Alagha, Yahya, Osman, Mohamed H, Alhusseiny, Ahmed M, Khalaf, Mariam M, Younes, Abo-Alela F, Abdulkarim, Ali, Younes, Duaa M, Gadallah, Ahmed M, Elkashash, Ahmad M, Fala, Salma Y, Zaki, Basma M, Beezley, Jonathan, Chittajallu, Deepak R, Manthey, David, Gutman, David A, Cooper, Lee A D
Publicado 2019

NuCLS: A scalable crowdsourcing approach and dataset for nucleus classification and segmentation in breast cancer

por Amgad, Mohamed, Atteya, Lamees A, Hussein, Hagar, Mohammed, Kareem Hosny, Hafiz, Ehab, Elsebaie, Maha A T, Alhusseiny, Ahmed M, AlMoslemany, Mohamed Atef, Elmatboly, Abdelmagid M, Pappalardo, Philip A, Sakr, Rokia Adel, Mobadersany, Pooya, Rachid, Ahmad, Saad, Anas M, Alkashash, Ahmad M, Ruhban, Inas A, Alrefai, Anas, Elgazar, Nada M, Abdulkarim, Ali, Farag, Abo-Alela, Etman, Amira, Elsaeed, Ahmed G, Alagha, Yahya, Amer, Yomna A, Raslan, Ahmed M, Nadim, Menatalla K, Elsebaie, Mai A T, Ayad, Ahmed, Hanna, Liza E, Gadallah, Ahmed, Elkady, Mohamed, Drumheller, Bradley, Jaye, David, Manthey, David, Gutman, David A, Elfandy, Habiba, Cooper, Lee A D
Publicado 2022

Report on computational assessment of Tumor Infiltrating Lymphocytes from the International Immuno-Oncology Biomarker Working Group

por Amgad, Mohamed, Stovgaard, Elisabeth Specht, Balslev, Eva, Thagaard, Jeppe, Chen, Weijie, Dudgeon, Sarah, Sharma, Ashish, Kerner, Jennifer K., Denkert, Carsten, Yuan, Yinyin, AbdulJabbar, Khalid, Wienert, Stephan, Savas, Peter, Voorwerk, Leonie, Beck, Andrew H., Madabhushi, Anant, Hartman, Johan, Sebastian, Manu M., Horlings, Hugo M., Hudeček, Jan, Ciompi, Francesco, Moore, David A., Singh, Rajendra, Roblin, Elvire, Balancin, Marcelo Luiz, Mathieu, Marie-Christine, Lennerz, Jochen K., Kirtani, Pawan, Chen, I-Chun, Braybrooke, Jeremy P., Pruneri, Giancarlo, Demaria, Sandra, Adams, Sylvia, Schnitt, Stuart J., Lakhani, Sunil R., Rojo, Federico, Comerma, Laura, Badve, Sunil S., Khojasteh, Mehrnoush, Symmans, W. Fraser, Sotiriou, Christos, Gonzalez-Ericsson, Paula, Pogue-Geile, Katherine L., Kim, Rim S., Rimm, David L., Viale, Giuseppe, Hewitt, Stephen M., Bartlett, John M. S., Penault-Llorca, Frédérique, Goel, Shom, Lien, Huang-Chun, Loibl, Sibylle, Kos, Zuzana, Loi, Sherene, Hanna, Matthew G., Michiels, Stefan, Kok, Marleen, Nielsen, Torsten O., Lazar, Alexander J., Bago-Horvath, Zsuzsanna, Kooreman, Loes F. S., van der Laak, Jeroen A. W. M., Saltz, Joel, Gallas, Brandon D., Kurkure, Uday, Barnes, Michael, Salgado, Roberto, Cooper, Lee A. D.
Publicado 2020

Pitfalls in assessing stromal tumor infiltrating lymphocytes (sTILs) in breast cancer

por Kos, Zuzana, Roblin, Elvire, Kim, Rim S., Michiels, Stefan, Gallas, Brandon D., Chen, Weijie, van de Vijver, Koen K., Goel, Shom, Adams, Sylvia, Demaria, Sandra, Viale, Giuseppe, Nielsen, Torsten O., Badve, Sunil S., Symmans, W. Fraser, Sotiriou, Christos, Rimm, David L., Hewitt, Stephen, Denkert, Carsten, Loibl, Sibylle, Luen, Stephen J., Bartlett, John M. S., Savas, Peter, Pruneri, Giancarlo, Dillon, Deborah A., Cheang, Maggie Chon U., Tutt, Andrew, Hall, Jacqueline A., Kok, Marleen, Horlings, Hugo M., Madabhushi, Anant, van der Laak, Jeroen, Ciompi, Francesco, Laenkholm, Anne-Vibeke, Bellolio, Enrique, Gruosso, Tina, Fox, Stephen B., Araya, Juan Carlos, Floris, Giuseppe, Hudeček, Jan, Voorwerk, Leonie, Beck, Andrew H., Kerner, Jen, Larsimont, Denis, Declercq, Sabine, Van den Eynden, Gert, Pusztai, Lajos, Ehinger, Anna, Yang, Wentao, AbdulJabbar, Khalid, Yuan, Yinyin, Singh, Rajendra, Hiley, Crispin, Bakir, Maise al, Lazar, Alexander J., Naber, Stephen, Wienert, Stephan, Castillo, Miluska, Curigliano, Giuseppe, Dieci, Maria-Vittoria, André, Fabrice, Swanton, Charles, Reis-Filho, Jorge, Sparano, Joseph, Balslev, Eva, Chen, I-Chun, Stovgaard, Elisabeth Ida Specht, Pogue-Geile, Katherine, Blenman, Kim R. M., Penault-Llorca, Frédérique, Schnitt, Stuart, Lakhani, Sunil R., Vincent-Salomon, Anne, Rojo, Federico, Braybrooke, Jeremy P., Hanna, Matthew G., Soler-Monsó, M. Teresa, Bethmann, Daniel, Castaneda, Carlos A., Willard-Gallo, Karen, Sharma, Ashish, Lien, Huang-Chun, Fineberg, Susan, Thagaard, Jeppe, Comerma, Laura, Gonzalez-Ericsson, Paula, Brogi, Edi, Loi, Sherene, Saltz, Joel, Klaushen, Frederick, Cooper, Lee, Amgad, Mohamed, Moore, David A., Salgado, Roberto
Publicado 2020