Metabolic and genetic basis for auxotrophies in Gram-negative species

por Seif, Yara, Choudhary, Kumari Sonal, Hefner, Ying, Anand, Amitesh, Yang, Laurence, Palsson, Bernhard O.
Publicado 2020

Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types

por Chen, Ke, Anand, Amitesh, Olson, Connor, Sandberg, Troy E., Gao, Ye, Mih, Nathan, Palsson, Bernhard O.
Publicado 2021

Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications

por Anand, Amitesh, Olson, Connor A., Sastry, Anand V., Patel, Arjun, Szubin, Richard, Yang, Laurence, Feist, Adam M., Palsson, Bernhard O.
Publicado 2021

Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility

por Sastry, Anand V., Dillon, Nicholas, Anand, Amitesh, Poudel, Saugat, Hefner, Ying, Xu, Sibei, Szubin, Richard, Feist, Adam M., Nizet, Victor, Palsson, Bernhard
Publicado 2021

Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity

por Anand, Amitesh, Patel, Arjun, Chen, Ke, Olson, Connor A., Phaneuf, Patrick V., Lamoureux, Cameron, Hefner, Ying, Szubin, Richard, Feist, Adam M., Palsson, Bernhard O.
Publicado 2022

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

por Kavvas, Erol S., Catoiu, Edward, Mih, Nathan, Yurkovich, James T., Seif, Yara, Dillon, Nicholas, Heckmann, David, Anand, Amitesh, Yang, Laurence, Nizet, Victor, Monk, Jonathan M., Palsson, Bernhard O.
Publicado 2018

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus

por Machado, Henrique, Seif, Yara, Sakoulas, George, Olson, Connor A., Hefner, Ying, Anand, Amitesh, Jones, Ying Z., Szubin, Richard, Palsson, Bernhard O., Nizet, Victor, Feist, Adam M.
Publicado 2021

Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators, and role in key physiological response

por Poudel, Saugat, Tsunemoto, Hannah, Seif, Yara, Sastry, Anand V., Szubin, Richard, Xu, Sibei, Machado, Henrique, Olson, Connor A., Anand, Amitesh, Pogliano, Joe, Nizet, Victor, Palsson, Bernhard O.
Publicado 2020

OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States

por Anand, Amitesh, Chen, Ke, Catoiu, Edward, Sastry, Anand V, Olson, Connor A, Sandberg, Troy E, Seif, Yara, Xu, Sibei, Szubin, Richard, Yang, Laurence, Feist, Adam M, Palsson, Bernhard O
Publicado 2020

Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration

por Anand, Amitesh, Chen, Ke, Yang, Laurence, Sastry, Anand V., Olson, Connor A., Poudel, Saugat, Seif, Yara, Hefner, Ying, Phaneuf, Patrick V., Xu, Sibei, Szubin, Richard, Feist, Adam M., Palsson, Bernhard O.
Publicado 2019