SICTIN: Rapid footprinting of massively parallel sequencing data

por Enroth, Stefan, Andersson, Robin, Wadelius, Claes, Komorowski, Jan
Publicado 2010

Transcription factor expression is the main determinant of variability in gene co‐activity

por van Duin, Lucas, Krautz, Robert, Rennie, Sarah, Andersson, Robin
Publicado 2023

Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions

por Rennie, Sarah, Dalby, Maria, van Duin, Lucas, Andersson, Robin
Publicado 2018

Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility

por Salvatore, Marco, Horlacher, Marc, Marsico, Annalisa, Winther, Ole, Andersson, Robin
Publicado 2023

Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells

por Bakoulis, Stylianos, Krautz, Robert, Alcaraz, Nicolas, Salvatore, Marco, Andersson, Robin
Publicado 2022

CAGEfightR: analysis of 5′-end data using R/Bioconductor

por Thodberg, Malte, Thieffry, Axel, Vitting-Seerup, Kristoffer, Andersson, Robin, Sandelin, Albin
Publicado 2019

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements

por Enroth, Stefan, Andersson, Claes R, Andersson, Robin, Wadelius, Claes, Gustafsson, Mats G, Komorowski, Jan
Publicado 2012

Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

por Einarsson, Hjörleifur, Salvatore, Marco, Vaagensø, Christian, Alcaraz, Nicolas, Bornholdt, Jette, Rennie, Sarah, Andersson, Robin
Publicado 2022

Pooled analysis of frontal lobe transcriptomic data identifies key mitophagy gene changes in Alzheimer's disease brain

por Mei, Taoyu, Li, Yuan, Orduña Dolado, Anna, Li, Zhiquan, Andersson, Robin, Berliocchi, Laura, Rasmussen, Lene Juel
Publicado 2023

Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa

por Enroth, Stefan, Rada-Iglesisas, Alvaro, Andersson, Robin, Wallerman, Ola, Wanders, Alkwin, Påhlman, Lars, Komorowski, Jan, Wadelius, Claes
Publicado 2011

Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities

por Rennie, Sarah, Dalby, Maria, Lloret-Llinares, Marta, Bakoulis, Stylianos, Dalager Vaagensø, Christian, Heick Jensen, Torben, Andersson, Robin
Publicado 2018

Principles of mRNA targeting via the Arabidopsis m(6)A-binding protein ECT2

por Arribas-Hernández, Laura, Rennie, Sarah, Köster, Tino, Porcelli, Carlotta, Lewinski, Martin, Staiger, Dorothee, Andersson, Robin, Brodersen, Peter
Publicado 2021

The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation

por Arribas-Hernández, Laura, Rennie, Sarah, Schon, Michael, Porcelli, Carlotta, Enugutti, Balaji, Andersson, Robin, Nodine, Michael D, Brodersen, Peter
Publicado 2021

Regulating retrotransposon activity through the use of alternative transcription start sites

por Persson, Jenna, Steglich, Babett, Smialowska, Agata, Boyd, Mette, Bornholdt, Jette, Andersson, Robin, Schurra, Catherine, Arcangioli, Benoit, Sandelin, Albin, Nielsen, Olaf, Ekwall, Karl
Publicado 2016

Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors

por Lennartsson, Andreas, Arner, Erik, Fagiolini, Michela, Saxena, Alka, Andersson, Robin, Takahashi, Hazuki, Noro, Yukihiko, Sng, Judy, Sandelin, Albin, Hensch, Takao K., Carninci, Piero
Publicado 2015

The frequent evolutionary birth and death of functional promoters in mouse and human

por Young, Robert S., Hayashizaki, Yoshihide, Andersson, Robin, Sandelin, Albin, Kawaji, Hideya, Itoh, Masayoshi, Lassmann, Timo, Carninci, Piero, Bickmore, Wendy A., Forrest, Alistair R., Taylor, Martin S.
Publicado 2015

The RNA exosome contributes to gene expression regulation during stem cell differentiation

por Lloret-Llinares, Marta, Karadoulama, Evdoxia, Chen, Yun, Wojenski, Luke A, Villafano, Geno J, Bornholdt, Jette, Andersson, Robin, Core, Leighton, Sandelin, Albin, Jensen, Torben Heick
Publicado 2018

PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells

por Agrawal Singh, Shuchi, Lerdrup, Mads, Gomes, Ana-Luisa R, van de Werken, Harmen JG, Vilstrup Johansen, Jens, Andersson, Robin, Sandelin, Albin, Helin, Kristian, Hansen, Klaus
Publicado 2019

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions

por Davis, Margaret R., Andersson, Robin, Severin, Jessica, de Hoon, Michiel, Bertin, Nicolas, Baillie, J. Kenneth, Kawaji, Hideya, Sandelin, Albin, Forrest, Alistair R.R., Summers, Kim M.
Publicado 2014

Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters

por Chen, Yun, Pai, Athma A., Herudek, Jan, Lubas, Michal, Meola, Nicola, Järvelin, Aino I., Andersson, Robin, Pelechano, Vicent, Steinmetz, Lars M., Heick Jensen, Torben, Sandelin, Albin
Publicado 2016