Protein oligomer modeling guided by predicted interchain contacts in CASP14

por Baek, Minkyung, Anishchenko, Ivan, Park, Hahnbeom, Humphreys, Ian R., Baker, David
Publicado 2021

Improved protein structure refinement guided by deep learning based accuracy estimation

por Hiranuma, Naozumi, Park, Hahnbeom, Baek, Minkyung, Anishchenko, Ivan, Dauparas, Justas, Baker, David
Publicado 2021

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs

por Sen, Neeladri, Anishchenko, Ivan, Bordin, Nicola, Sillitoe, Ian, Velankar, Sameer, Baker, David, Orengo, Christine
Publicado 2022

Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM

por Farrell, Daniel P., Anishchenko, Ivan, Shakeel, Shabih, Lauko, Anna, Passmore, Lori A., Baker, David, DiMaio, Frank
Publicado 2020

Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14

por Anishchenko, Ivan, Baek, Minkyung, Park, Hahnbeom, Hiranuma, Naozumi, Kim, David E., Dauparas, Justas, Mansoor, Sanaa, Humphreys, Ian R., Baker, David
Publicado 2021

Protein sequence design by conformational landscape optimization

por Norn, Christoffer, Wicky, Basile I. M., Juergens, David, Liu, Sirui, Kim, David, Tischer, Doug, Koepnick, Brian, Anishchenko, Ivan, Baker, David, Ovchinnikov, Sergey
Publicado 2021

Structural basis for autophagy inhibition by the human Rubicon–Rab7 complex

por Bhargava, Hersh K., Tabata, Keisuke, Byck, Jordan M., Hamasaki, Maho, Farrell, Daniel P., Anishchenko, Ivan, DiMaio, Frank, Im, Young Jun, Yoshimori, Tamotsu, Hurley, James H.
Publicado 2020

De novo design of luciferases using deep learning

por Yeh, Andy Hsien-Wei, Norn, Christoffer, Kipnis, Yakov, Tischer, Doug, Pellock, Samuel J., Evans, Declan, Ma, Pengchen, Lee, Gyu Rie, Zhang, Jason Z., Anishchenko, Ivan, Coventry, Brian, Cao, Longxing, Dauparas, Justas, Halabiya, Samer, DeWitt, Michelle, Carter, Lauren, Houk, K. N., Baker, David
Publicado 2023

In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19

por Phan, Isabelle Q., Subramanian, Sandhya, Kim, David, Murphy, Michael, Pettie, Deleah, Carter, Lauren, Anishchenko, Ivan, Barrett, Lynn K., Craig, Justin, Tillery, Logan, Shek, Roger, Harrington, Whitney E., Koelle, David M., Wald, Anna, Veesler, David, King, Neil, Boonyaratanakornkit, Jim, Isoherranen, Nina, Greninger, Alexander L., Jerome, Keith R., Chu, Helen, Staker, Bart, Stewart, Lance, Myler, Peter J., Van Voorhis, Wesley C.
Publicado 2021

Scaffolding protein functional sites using deep learning

por Wang, Jue, Lisanza, Sidney, Juergens, David, Tischer, Doug, Watson, Joseph L., Castro, Karla M., Ragotte, Robert, Saragovi, Amijai, Milles, Lukas F., Baek, Minkyung, Anishchenko, Ivan, Yang, Wei, Hicks, Derrick R., Expòsit, Marc, Schlichthaerle, Thomas, Chun, Jung-Ho, Dauparas, Justas, Bennett, Nathaniel, Wicky, Basile I. M., Muenks, Andrew, DiMaio, Frank, Correia, Bruno, Ovchinnikov, Sergey, Baker, David
Publicado 2022

Accurate prediction of protein structures and interactions using a 3-track neural network

por Baek, Minkyung, DiMaio, Frank, Anishchenko, Ivan, Dauparas, Justas, Ovchinnikov, Sergey, Lee, Gyu Rie, Wang, Jue, Cong, Qian, Kinch, Lisa N., Schaeffer, R. Dustin, Millán, Claudia, Park, Hahnbeom, Adams, Carson, Glassman, Caleb R., DeGiovanni, Andy, Pereira, Jose H., Rodrigues, Andria V., van Dijk, Alberdina A., Ebrecht, Ana C., Opperman, Diederik J., Sagmeister, Theo, Buhlheller, Christoph, Pavkov-Keller, Tea, Rathinaswamy, Manoj K, Dalwadi, Udit, Yip, Calvin K, Burke, John E, Garcia, K. Christopher, Grishin, Nick V., Adams, Paul D., Read, Randy J., Baker, David
Publicado 2021

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

por Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Publicado 2016