SPAligner: alignment of long diverged molecular sequences to assembly graphs

por Dvorkina, Tatiana, Antipov, Dmitry, Korobeynikov, Anton, Nurk, Sergey
Publicado 2020

Plasmid detection and assembly in genomic and metagenomic data sets

por Antipov, Dmitry, Raiko, Mikhail, Lapidus, Alla, Pevzner, Pavel A.
Publicado 2019

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

por Bushmanova, Elena, Antipov, Dmitry, Lapidus, Alla, Prjibelski, Andrey D
Publicado 2019

viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data

por Antipov, Dmitry, Rayko, Mikhail, Kolmogorov, Mikhail, Pevzner, Pavel A.
Publicado 2022

Versatile genome assembly evaluation with QUAST-LG

por Mikheenko, Alla, Prjibelski, Andrey, Saveliev, Vladislav, Antipov, Dmitry, Gurevich, Alexey
Publicado 2018

Varidnaviruses in the Human Gut: A Major Expansion of the Order Vinavirales

por Yutin, Natalya, Rayko, Mike, Antipov, Dmitry, Mutz, Pascal, Wolf, Yuri I., Krupovic, Mart, Koonin, Eugene V.
Publicado 2022

Extending rnaSPAdes functionality for hybrid transcriptome assembly

por Prjibelski, Andrey D., Puglia, Giuseppe D., Antipov, Dmitry, Bushmanova, Elena, Giordano, Daniela, Mikheenko, Alla, Vitale, Domenico, Lapidus, Alla
Publicado 2020

Thousands of previously unknown phages discovered in whole-community human gut metagenomes

por Benler, Sean, Yutin, Natalya, Antipov, Dmitry, Rayko, Mikhail, Shmakov, Sergey, Gussow, Ayal B., Pevzner, Pavel, Koonin, Eugene V.
Publicado 2021

Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features

por Yutin, Natalya, Benler, Sean, Shmakov, Sergei A., Wolf, Yuri I., Tolstoy, Igor, Rayko, Mike, Antipov, Dmitry, Pevzner, Pavel A., Koonin, Eugene V.
Publicado 2021

Critical Assessment of Metagenome Interpretation: the second round of challenges

por Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Publicado 2022