miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations

por Aparicio-Puerta, Ernesto, Hirsch, Pascal, Schmartz, Georges P, Kern, Fabian, Fehlmann, Tobias, Keller, Andreas
Publicado 2023

Genome-Wide Analysis of microRNA Expression Profile in Roots and Leaves of Three Wheat Cultivars under Water and Drought Conditions

por Gómez-Martín, Cristina, Zhou, Hui, Medina, José María, Aparicio-Puerta, Ernesto, Shi, Bujun, Hackenberg, Michael
Publicado 2023

IsoSeek for unbiased and UMI-informed sequencing of miRNAs from low input samples at single-nucleotide resolution

por van Eijndhoven, Monique A.J., Scheepbouwer, Chantal, Aparicio-Puerta, Ernesto, Hackenberg, Michael, Pegtel, D. Michiel
Publicado 2023

liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies

por Aparicio-Puerta, Ernesto, Jáspez, David, Lebrón, Ricardo, Koppers-Lalic, Danijela, Marchal, Juan A, Hackenberg, Michael
Publicado 2019

mirnaQC: a webserver for comparative quality control of miRNA-seq data

por Aparicio-Puerta, Ernesto, Gómez-Martín, Cristina, Giannoukakos, Stavros, Medina, José María, Marchal, Juan Antonio, Hackenberg, Michael
Publicado 2020

Reassessment of miRNA variant (isomiRs) composition by small RNA sequencing

por Gómez-Martín, Cristina, Aparicio-Puerta, Ernesto, van Eijndhoven, Monique A.J., Medina, José M., Hackenberg, Michael, Pegtel, D. Michiel
Publicado 2023

isomiRdb: microRNA expression at isoform resolution

por Aparicio-Puerta, Ernesto, Hirsch, Pascal, Schmartz, Georges P, Fehlmann, Tobias, Keller, Verena, Engel, Annika, Kern, Fabian, Hackenberg, Michael, Keller, Andreas
Publicado 2022

miRTargetLink 2.0—interactive miRNA target gene and target pathway networks

por Kern, Fabian, Aparicio-Puerta, Ernesto, Li, Yongping, Fehlmann, Tobias, Kehl, Tim, Wagner, Viktoria, Ray, Kamalika, Ludwig, Nicole, Lenhof, Hans-Peter, Meese, Eckart, Keller, Andreas
Publicado 2021

Functional Enrichment Analysis of Regulatory Elements

por Garcia-Moreno, Adrian, López-Domínguez, Raul, Villatoro-García, Juan Antonio, Ramirez-Mena, Alberto, Aparicio-Puerta, Ernesto, Hackenberg, Michael, Pascual-Montano, Alberto, Carmona-Saez, Pedro
Publicado 2022

Transcriptomic analysis of the tick midgut and salivary gland responses upon repeated blood-feeding on a vertebrate host

por Medina, José María, Jmel, Mohamed Amine, Cuveele, Brent, Gómez-Martín, Cristina, Aparicio-Puerta, Ernesto, Mekki, Imen, Kotál, Jan, Martins, Larissa Almeida, Hackenberg, Michael, Bensaoud, Chaima, Kotsyfakis, Michail
Publicado 2022

MirGeneDB 2.0: the metazoan microRNA complement

por Fromm, Bastian, Domanska, Diana, Høye, Eirik, Ovchinnikov, Vladimir, Kang, Wenjing, Aparicio-Puerta, Ernesto, Johansen, Morten, Flatmark, Kjersti, Mathelier, Anthony, Hovig, Eivind, Hackenberg, Michael, Friedländer, Marc R, Peterson, Kevin J
Publicado 2020

MirGeneDB 2.0: the metazoan microRNA complement

por Fromm, Bastian, Domanska, Diana, Høye, Eirik, Ovchinnikov, Vladimir, Kang, Wenjing, Aparicio-Puerta, Ernesto, Johansen, Morten, Flatmark, Kjersti, Mathelier, Anthony, Hovig, Eivind, Hackenberg, Michael, Friedländer, Marc R, Peterson, Kevin J
Publicado 2020

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression

por Aparicio-Puerta, Ernesto, Lebrón, Ricardo, Rueda, Antonio, Gómez-Martín, Cristina, Giannoukakos, Stavros, Jaspez, David, Medina, José María, Zubkovic, Andreja, Jurak, Igor, Fromm, Bastian, Marchal, Juan Antonio, Oliver, José, Hackenberg, Michael
Publicado 2019

sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms

por Aparicio-Puerta, Ernesto, Gómez-Martín, Cristina, Giannoukakos, Stavros, Medina, José María, Scheepbouwer, Chantal, García-Moreno, Adrián, Carmona-Saez, Pedro, Fromm, Bastian, Pegtel, Michiel, Keller, Andreas, Marchal, Juan Antonio, Hackenberg, Michael
Publicado 2022

Validation of human microRNA target pathways enables evaluation of target prediction tools

por Kern, Fabian, Krammes, Lena, Danz, Karin, Diener, Caroline, Kehl, Tim, Küchler, Oliver, Fehlmann, Tobias, Kahraman, Mustafa, Rheinheimer, Stefanie, Aparicio-Puerta, Ernesto, Wagner, Sylvia, Ludwig, Nicole, Backes, Christina, Lenhof, Hans-Peter, von Briesen, Hagen, Hart, Martin, Keller, Andreas, Meese, Eckart
Publicado 2020

MirGeneDB 2.1: toward a complete sampling of all major animal phyla

por Fromm, Bastian, Høye, Eirik, Domanska, Diana, Zhong, Xiangfu, Aparicio-Puerta, Ernesto, Ovchinnikov, Vladimir, Umu, Sinan U, Chabot, Peter J, Kang, Wenjing, Aslanzadeh, Morteza, Tarbier, Marcel, Mármol-Sánchez, Emilio, Urgese, Gianvito, Johansen, Morten, Hovig, Eivind, Hackenberg, Michael, Friedländer, Marc R, Peterson, Kevin J
Publicado 2021

Ageing-associated small RNA cargo of extracellular vesicles

por Kern, Fabian, Kuhn, Thomas, Ludwig, Nicole, Simon, Martin, Gröger, Laura, Fabis, Natalie, Aparicio-Puerta, Ernesto, Salhab, Abdulrahman, Fehlmann, Tobias, Hahn, Oliver, Engel, Annika, Wagner, Viktoria, Koch, Marcus, Winek, Katarzyna, Soreq, Hermona, Nazarenko, Irina, Fuhrmann, Gregor, Wyss-Coray, Tony, Meese, Eckart, Keller, Verena, Laschke, Matthias W., Keller, Andreas
Publicado 2023

MicroRNA-4732-3p Is Dysregulated in Breast Cancer Patients with Cardiotoxicity, and Its Therapeutic Delivery Protects the Heart from Doxorubicin-Induced Oxidative Stress in Rats

por Sánchez-Sánchez, Rafael, Reinal, Ignacio, Peiró-Molina, Esteban, Buigues, Marc, Tejedor, Sandra, Hernándiz, Amparo, Selva, Marta, Hervás, David, Cañada, Antonio J., Dorronsoro, Akaitz, Santaballa, Ana, Salvador, Carmen, Caiment, Florian, Kleinjans, Jos, Martínez-Dolz, Luis, Moscoso, Isabel, Lage, Ricardo, González-Juanatey, José R., Panadero, Joaquín, Aparicio-Puerta, Ernesto, Bernad, Antonio, Sepúlveda, Pilar
Publicado 2022

ALL-tRNAseq enables robust tRNA profiling in tissue samples

por Scheepbouwer, Chantal, Aparicio-Puerta, Ernesto, Gomez-Martin, Cristina, Verschueren, Heleen, van Eijndhoven, Monique, Wedekind, Laurine E., Giannoukakos, Stavros, Hijmering, Nathalie, Gasparotto, Lisa, van der Galien, Hilde T., van Rijn, Roos S., Aronica, Eleonora, Kibbelaar, Robby, Heine, Vivi M., Wesseling, Pieter, Noske, David P., Vandertop, W. Peter, de Jong, Daphne, Pegtel, D. Michiel, Hackenberg, Michael, Wurdinger, Tom, Gerber, Alan, Koppers-Lalic, Danijela
Publicado 2023

Extracellular vesicle miRNA predict FDG‐PET status in patients with classical Hodgkin Lymphoma

por Drees, Esther E. E., Roemer, Margaretha G. M., Groenewegen, Nils J., Perez‐Boza, Jennifer, van Eijndhoven, Monique A. J., Prins, Leah I., Verkuijlen, Sandra A. W. M., Tran, Xuan‐Mai, Driessen, Julia, Zwezerijnen, G. J. C., Stathi, Phylicia, Mol, Kevin, Karregat, Joey J. J. P., Kalantidou, Aikaterini, Vallés‐Martí, Andrea, Molenaar, T. J., Aparicio‐Puerta, Ernesto, van Dijk, Erik, Ylstra, Bauke, Groothuis‐Oudshoorn, Catharina G. M., Hackenberg, Michael, de Jong, Daphne, Zijlstra, Josée M., Pegtel, D. Michiel
Publicado 2021