scMET: Bayesian modeling of DNA methylation heterogeneity at single-cell resolution

por Kapourani, Chantriolnt-Andreas, Argelaguet, Ricard, Sanguinetti, Guido, Vallejos, Catalina A.
Publicado 2021

MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data

por Argelaguet, Ricard, Arnol, Damien, Bredikhin, Danila, Deloro, Yonatan, Velten, Britta, Marioni, John C., Stegle, Oliver
Publicado 2020

Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO

por Velten, Britta, Braunger, Jana M., Argelaguet, Ricard, Arnol, Damien, Wirbel, Jakob, Bredikhin, Danila, Zeller, Georg, Stegle, Oliver
Publicado 2022

8C-like cells capture the human zygotic genome activation program in vitro

por Taubenschmid-Stowers, Jasmin, Rostovskaya, Maria, Santos, Fátima, Ljung, Sebastian, Argelaguet, Ricard, Krueger, Felix, Nichols, Jennifer, Reik, Wolf
Publicado 2022

Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets

por Argelaguet, Ricard, Velten, Britta, Arnol, Damien, Dietrich, Sascha, Zenz, Thorsten, Marioni, John C, Buettner, Florian, Huber, Wolfgang, Stegle, Oliver
Publicado 2018

Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis

por Clark, Stephen J., Argelaguet, Ricard, Lohoff, Tim, Krueger, Felix, Drage, Deborah, Göttgens, Berthold, Marioni, John C., Nichols, Jennifer, Reik, Wolf
Publicado 2022

Curated single cell multimodal landmark datasets for R/Bioconductor

por Eckenrode, Kelly B., Righelli, Dario, Ramos, Marcel, Argelaguet, Ricard, Vanderaa, Christophe, Geistlinger, Ludwig, Culhane, Aedin C., Gatto, Laurent, Carey, Vincent, Morgan, Martin, Risso, Davide, Waldron, Levi
Publicado 2023

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

por Clark, Stephen J., Argelaguet, Ricard, Kapourani, Chantriolnt-Andreas, Stubbs, Thomas M., Lee, Heather J., Alda-Catalinas, Celia, Krueger, Felix, Sanguinetti, Guido, Kelsey, Gavin, Marioni, John C., Stegle, Oliver, Reik, Wolf
Publicado 2018

Multi-omics profiling of mouse gastrulation at single cell resolution

por Argelaguet, Ricard, Clark, Stephen J, Mohammed, Hisham, Stapel, L Carine, Krueger, Christel, Kapourani, Chantriolnt-Andreas, Imaz-Rosshandler, Ivan, Lohoff, Tim, Xiang, Yunlong, Hanna, Courtney W, Smallwood, Sebastien, Ibarra-Soria, Ximena, Buettner, Florian, Sanguinetti, Guido, Xie, Wei, Krueger, Felix, Göttgens, Berthold, Rugg-Gunn, Peter J., Kelsey, Gavin, Dean, Wendy, Nichols, Jennifer, Stegle, Oliver, Marioni, John C, Reik, Wolf
Publicado 2019

Integrative Transkingdom Analysis of the Gut Microbiome in Antibiotic Perturbation and Critical Illness

por Haak, Bastiaan W., Argelaguet, Ricard, Kinsella, Cormac M., Kullberg, Robert F. J., Lankelma, Jacqueline M., Deijs, Martin, Klein, Michelle, Jebbink, Maarten F., Hugenholtz, Floor, Kostidis, Sarantos, Giera, Martin, Hakvoort, Theodorus B. M., de Jonge, Wouter J., Schultz, Marcus J., van Gool, Tom, van der Poll, Tom, de Vos, Willem M., van der Hoek, Lia M., Wiersinga, W. Joost
Publicado 2021

Community-wide hackathons to identify central themes in single-cell multi-omics

por Lê Cao, Kim-Anh, Abadi, Al J., Davis-Marcisak, Emily F., Hsu, Lauren, Arora, Arshi, Coullomb, Alexis, Deshpande, Atul, Feng, Yuzhou, Jeganathan, Pratheepa, Loth, Melanie, Meng, Chen, Mu, Wancen, Pancaldi, Vera, Sankaran, Kris, Righelli, Dario, Singh, Amrit, Sodicoff, Joshua S., Stein-O’Brien, Genevieve L., Subramanian, Ayshwarya, Welch, Joshua D., You, Yue, Argelaguet, Ricard, Carey, Vincent J., Dries, Ruben, Greene, Casey S., Holmes, Susan, Love, Michael I., Ritchie, Matthew E., Yuan, Guo-Cheng, Culhane, Aedin C., Fertig, Elana
Publicado 2021

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

por Cao, Kim-Anh Lê, Abadi, Al J., Davis-Marcisak, Emily F., Hsu, Lauren, Arora, Arshi, Coullomb, Alexis, Deshpande, Atul, Feng, Yuzhou, Jeganathan, Pratheepa, Loth, Melanie, Meng, Chen, Mu, Wancen, Pancaldi, Vera, Sankaran, Kris, Righelli, Dario, Singh, Amrit, Sodicoff, Joshua S., Stein-O’Brien, Genevieve L., Subramanian, Ayshwarya, Welch, Joshua D., You, Yue, Argelaguet, Ricard, Carey, Vincent J., Dries, Ruben, Greene, Casey S., Holmes, Susan, Love, Michael I., Ritchie, Matthew E., Yuan, Guo-Cheng, Culhane, Aedin C., Fertig, Elana
Publicado 2021