Ironing out Neurodegeneration: New Class of Lipids Promotes Ferroptosis in Dopaminergic Neurons

por Kostenko, Anastasiia, Aron, Allegra T.
Publicado 2023

An Endoperoxide Reactivity-Based FRET Probe for Ratiometric Fluorescence Imaging of Labile Iron Pools in Living Cells

por Aron, Allegra T., Loehr, Morten O., Bogena, Jana, Chang, Christopher J.
Publicado 2016

Recognition- and Reactivity-Based Fluorescent Probes for Studying Transition Metal Signaling in Living Systems

por Aron, Allegra T., Ramos-Torres, Karla M., Cotruvo, Joseph A., Chang, Christopher J.
Publicado 2015

Magnetotactic Bacteria Accumulate a Large Pool of Iron Distinct from Their Magnetite Crystals

por Amor, Matthieu, Ceballos, Alejandro, Wan, Juan, Simon, Christian P., Aron, Allegra T., Chang, Christopher J., Hellman, Frances, Komeili, Arash
Publicado 2020

ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and In Silico Metabolite Structure Prediction

por Quinlan, Zachary A., Koester, Irina, Aron, Allegra T., Petras, Daniel, Aluwihare, Lihini I., Dorrestein, Pieter C., Nelson, Craig E., Wegley Kelly, Linda
Publicado 2022

cAMP signaling regulates DNA hydroxymethylation by augmenting the intracellular labile ferrous iron pool

por Camarena, Vladimir, Sant, David W, Huff, Tyler C, Mustafi, Sushmita, Muir, Ryan K, Aron, Allegra T, Chang, Christopher J, Renslo, Adam R, Monje, Paula V, Wang, Gaofeng
Publicado 2017

Oscillatory cAMP signaling rapidly alters H3K4 methylation

por Huff, Tyler C, Camarena, Vladimir, Sant, David W, Wilkes, Zachary, Van Booven, Derek, Aron, Allegra T, Muir, Ryan K, Renslo, Adam R, Chang, Christopher J, Monje, Paula V, Wang, Gaofeng
Publicado 2019

Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform

por Stincone, Paolo, Pakkir Shah, Abzer K., Schmid, Robin, Graves, Lana G., Lambidis, Stilianos P., Torres, Ralph R., Xia, Shu-Ning, Minda, Vidit, Aron, Allegra T., Wang, Mingxun, Hughes, Chambers C., Petras, Daniel
Publicado 2023

Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol

por Pendergraft, Matthew A., Belda-Ferre, Pedro, Petras, Daniel, Morris, Clare K., Mitts, Brock A., Aron, Allegra T., Bryant, MacKenzie, Schwartz, Tara, Ackermann, Gail, Humphrey, Greg, Kaandorp, Ethan, Dorrestein, Pieter C., Knight, Rob, Prather, Kimberly A.
Publicado 2023

Copper Regulates Cyclic AMP-Dependent Lipolysis

por Krishnamoorthy, Lakshmi, Cotruvo, Joseph A., Chan, Jefferson, Kaluarachchi, Harini, Muchenditsi, Abigael, Pendyala, Venkata S., Jia, Shang, Aron, Allegra T., Ackerman, Cheri M., Vander Wal, Mark N., Guan, Timothy, Smaga, Lukas P., Farhi, Samouil L., New, Elizabeth J., Lutsenko, Svetlana, Chang, Christopher J.
Publicado 2016

MDM2 and MDMX promote ferroptosis by PPARα-mediated lipid remodeling

por Venkatesh, Divya, O'Brien, Nicholas A., Zandkarimi, Fereshteh, Tong, David R., Stokes, Michael E., Dunn, Denise E., Kengmana, Everett S., Aron, Allegra T., Klein, Alyssa M., Csuka, Joleen M., Moon, Sung-Hwan, Conrad, Marcus, Chang, Christopher J., Lo, Donald C., D'Alessandro, Angelo, Prives, Carol, Stockwell, Brent R.
Publicado 2020

Functional genomics and metabolomics advance the ethnobotany of the Samoan traditional medicine “matalafi”

por Molimau-Samasoni, Seeseei, Woolner, Victoria Helen, Foliga, Su’emalo Talie, Robichon, Katharina, Patel, Vimal, Andreassend, Sarah K., Sheridan, Jeffrey P., Te Kawa, Tama, Gresham, David, Miller, Darach, Sinclair, Daniel J., La Flamme, Anne C., Melnik, Alexey V., Aron, Allegra, Dorrestein, Pieter C., Atkinson, Paul H., Keyzers, Robert A., Munkacsi, Andrew B.
Publicado 2021

NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters

por Leão, Tiago F, Wang, Mingxun, da Silva, Ricardo, Gurevich, Alexey, Bauermeister, Anelize, Gomes, Paulo Wender P, Brejnrod, Asker, Glukhov, Evgenia, Aron, Allegra T, Louwen, Joris J R, Kim, Hyun Woo, Reher, Raphael, Fiore, Marli F, van der Hooft, Justin J J, Gerwick, Lena, Gerwick, William H, Bandeira, Nuno, Dorrestein, Pieter C
Publicado 2022

Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut

por Behnsen, Judith, Zhi, Hui, Aron, Allegra T., Subramanian, Vivekanandan, Santus, William, Lee, Michael H., Gerner, Romana R., Petras, Daniel, Liu, Janet Z., Green, Keith D., Price, Sarah L., Camacho, Jose, Hillman, Hannah, Tjokrosurjo, Joshua, Montaldo, Nicola P., Hoover, Evelyn M., Treacy-Abarca, Sean, Gilston, Benjamin A., Skaar, Eric P., Chazin, Walter J., Garneau-Tsodikova, Sylvie, Lawrenz, Matthew B., Perry, Robert D., Nuccio, Sean-Paul, Dorrestein, Pieter C., Raffatellu, Manuela
Publicado 2021

Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses

por Mannochio-Russo, Helena, Swift, Sean O. I., Nakayama, Kirsten K., Wall, Christopher B., Gentry, Emily C., Panitchpakdi, Morgan, Caraballo-Rodriguez, Andrés M., Aron, Allegra T., Petras, Daniel, Dorrestein, Kathleen, Dorrestein, Tatiana K., Williams, Taylor M., Nalley, Eileen M., Altman-Kurosaki, Noam T., Martinelli, Mike, Kuwabara, Jeff Y., Darcy, John L., Bolzani, Vanderlan S., Wegley Kelly, Linda, Mora, Camilo, Yew, Joanne Y., Amend, Anthony S., McFall-Ngai, Margaret, Hynson, Nicole A., Dorrestein, Pieter C., Nelson, Craig E.
Publicado 2023

Native metabolomics identifies the rivulariapeptolide family of protease inhibitors

por Reher, Raphael, Aron, Allegra T., Fajtová, Pavla, Stincone, Paolo, Wagner, Berenike, Pérez-Lorente, Alicia I., Liu, Chenxi, Shalom, Ido Y. Ben, Bittremieux, Wout, Wang, Mingxun, Jeong, Kyowon, Matos-Hernandez, Marie L., Alexander, Kelsey L., Caro-Diaz, Eduardo J., Naman, C. Benjamin, Scanlan, J. H. William, Hochban, Phil M. M., Diederich, Wibke E., Molina-Santiago, Carlos, Romero, Diego, Selim, Khaled A., Sass, Peter, Brötz-Oesterhelt, Heike, Hughes, Chambers C., Dorrestein, Pieter C., O’Donoghue, Anthony J., Gerwick, William H., Petras, Daniel
Publicado 2022

Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

por Schmid, Robin, Petras, Daniel, Nothias, Louis-Félix, Wang, Mingxun, Aron, Allegra T., Jagels, Annika, Tsugawa, Hiroshi, Rainer, Johannes, Garcia-Aloy, Mar, Dührkop, Kai, Korf, Ansgar, Pluskal, Tomáš, Kameník, Zdeněk, Jarmusch, Alan K., Caraballo-Rodríguez, Andrés Mauricio, Weldon, Kelly C., Nothias-Esposito, Melissa, Aksenov, Alexander A., Bauermeister, Anelize, Albarracin Orio, Andrea, Grundmann, Carlismari O., Vargas, Fernando, Koester, Irina, Gauglitz, Julia M., Gentry, Emily C., Hövelmann, Yannick, Kalinina, Svetlana A., Pendergraft, Matthew A., Panitchpakdi, Morgan, Tehan, Richard, Le Gouellec, Audrey, Aleti, Gajender, Mannochio Russo, Helena, Arndt, Birgit, Hübner, Florian, Hayen, Heiko, Zhi, Hui, Raffatellu, Manuela, Prather, Kimberly A., Aluwihare, Lihini I., Böcker, Sebastian, McPhail, Kerry L., Humpf, Hans-Ulrich, Karst, Uwe, Dorrestein, Pieter C.
Publicado 2021

A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data

por Zuffa, Simone, Schmid, Robin, Bauermeister, Anelize, Gomes, Paulo Wender P., Caraballo-Rodriguez, Andres M., Abiead, Yasin El, Aron, Allegra T., Gentry, Emily C., Zemlin, Jasmine, Meehan, Michael J., Avalon, Nicole E., Cichewicz, Robert H., Buzun, Ekaterina, Terrazas, Marvic Carrillo, Hsu, Chia-Yun, Oles, Renee, Ayala, Adriana Vasquez, Zhao, Jiaqi, Chu, Hiutung, Kuijpers, Mirte C. M., Jackrel, Sara L., Tugizimana, Fidele, Nephali, Lerato Pertunia, Dubery, Ian A., Madala, Ntakadzeni Edwin, Moreira, Eduarda Antunes, Costa-Lotufo, Leticia Veras, Lopes, Norberto Peporine, Rezende-Teixeira, Paula, Jimenez, Paula C., Rimal, Bipin, Patterson, Andrew D., Traxler, Matthew F., de Cassia Pessotti, Rita, Alvarado-Villalobos, Daniel, Tamayo-Castillo, Giselle, Chaverri, Priscila, Escudero-Leyva, Efrain, Quiros-Guerrero, Luis-Manuel, Bory, Alexandre Jean, Joubert, Juliette, Rutz, Adriano, Wolfender, Jean-Luc, Allard, Pierre-Marie, Sichert, Andreas, Pontrelli, Sammy, Pullman, Benjamin S, Bandeira, Nuno, Gerwick, William H., Gindro, Katia, Massana-Codina, Josep, Wagner, Berenike C., Forchhammer, Karl, Petras, Daniel, Aiosa, Nicole, Garg, Neha, Liebeke, Manuel, Bourceau, Patric, Kang, Kyo Bin, Gadhavi, Henna, de Carvalho, Luiz Pedro Sorio, dos Santos, Mariana Silva, Pérez-Lorente, Alicia Isabel, Molina-Santiago, Carlos, Romero, Diego, Franke, Raimo, Brönstrup, Mark, de León, Arturo Vera Ponce, Pope, Phillip Byron, Rosa, Sabina Leanti La, Barbera, Giorgia La, Roager, Henrik M., Laursen, Martin Frederik, Hammerle, Fabian, Siewert, Bianka, Peintner, Ursula, Licona-Cassani, Cuauhtemoc, Rodriguez-Orduña, Lorena, Rampler, Evelyn, Hildebrand, Felina, Koellensperger, Gunda, Schoeny, Harald, Hohenwallner, Katharina, Panzenboeck, Lisa, Gregor, Rachel, O’Neill, Ellis Charles, Roxborough, Eve Tallulah, Odoi, Jane, Bale, Nicole J., Ding, Su, Sinninghe Damsté, Jaap S., Guan, Xueli Li, Cui, Jerry J., Ju, Kou-San, Silva, Denise Brentan, Silva, Fernanda Motta Ribeiro, da Silva, Gilvan Ferreira, Koolen, Hector H. F., Grundmann, Carlismari, Clement, Jason A., Mohimani, Hosein, Broders, Kirk, McPhail, Kerry L., Ober-Singleton, Sidnee E., Rath, Christopher M., McDonald, Daniel, Knight, Rob, Wang, Mingxun, Dorrestein, Pieter C.
Publicado 2023

A community resource for paired genomic and metabolomic data mining

por Schorn, Michelle A., Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D., Aksenov, Alexander A., Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T., Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D., Baunach, Martin, Beemelmanns, Christine, Beman, J. Michael, Berlanga-Clavero, María Victoria, Blacutt, Alex A., Bode, Helge B., Boullie, Anne, Brejnrod, Asker, Bugni, Tim S., Calteau, Alexandra, Cao, Liu, Carrión, Víctor J., Castelo-Branco, Raquel, Chanana, Shaurya, Chase, Alexander B., Chevrette, Marc G., Costa-Lotufo, Leticia V., Crawford, Jason M., Currie, Cameron R., Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M., Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J., Edlund, Anna, Fewer, David P., Garg, Neha, Gauglitz, Julia M., Gentry, Emily C., Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillén Matus, Dulce G., Helfrich, Eric J. N., Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R., Kang, Kyo Bin, Kaysser, Leonard, Kelleher, Neil L., Kim, Chung Sub, Kim, Ki Hyun, Koester, Irina, König, Gabriele M., Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C., Maloney, Katherine N., Männle, Daniel, Martin H., Christian, McAvoy, Andrew C., Metcalf, Willam W., Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S., Mullowney, Michael W., Muskat, Mitchell, Nothias, Louis-Félix, O’Neill, Ellis C., Parkinson, Elizabeth I., Petras, Daniel, Piel, Jörn, Pierce, Emily C., Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M. Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M., Sørensen, Søren Johannes, Sosio, Margherita, Süssmuth, Roderich D., Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J., Tobias, Nicholas J., Trindade-Silva, Amaro E., van Wezel, Gilles P., Wang, Mingxun, Weldon, Kelly C., Zhang, Fan, Ziemert, Nadine, Duncan, Katherine R., Crüsemann, Max, Rogers, Simon, Dorrestein, Pieter C., Medema, Marnix H., van der Hooft, Justin J. J.
Publicado 2021