PerSort Facilitates Characterization and Elimination of Persister Subpopulation in Mycobacteria

por Srinivas, Vivek, Arrieta-Ortiz, Mario L., Kaur, Amardeep, Peterson, Eliza J. R., Baliga, Nitin S.
Publicado 2020

Inference of Bacterial Small RNA Regulatory Networks and Integration with Transcription Factor-Driven Regulatory Networks

por Arrieta-Ortiz, Mario L., Hafemeister, Christoph, Shuster, Bentley, Baliga, Nitin S., Bonneau, Richard, Eichenberger, Patrick
Publicado 2020

Genomes-based phylogeny of the genus Xanthomonas

por Rodriguez-R, Luis M, Grajales, Alejandro, Arrieta-Ortiz, Mario L, Salazar, Camilo, Restrepo, Silvia, Bernal, Adriana
Publicado 2012

Mycobacterium abscessus biofilms produce an extracellular matrix and have a distinct mycolic acid profile

por Dokic, Anja, Peterson, Eliza, Arrieta-Ortiz, Mario L., Pan, Min, Di Maio, Alessandro, Baliga, Nitin, Bhatt, Apoorva
Publicado 2021

A systems-level gene regulatory network model for Plasmodium falciparum

por Neal, Maxwell L, Wei, Ling, Peterson, Eliza, Arrieta-Ortiz, Mario L, Danziger, Samuel A, Baliga, Nitin S, Kaushansky, Alexis, Aitchison, John D
Publicado 2021

Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks using PRIME

por Immanuel, Selva Rupa Christinal, Arrieta-Ortiz, Mario L., Ruiz, Rene A., Pan, Min, Lopez Garcia de Lomana, Adrian, Peterson, Eliza J. R., Baliga, Nitin S.
Publicado 2021

Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis

por Peterson, Eliza J.R., Abidi, Abrar A., Arrieta-Ortiz, Mario L., Aguilar, Boris, Yurkovich, James T., Kaur, Amardeep, Pan, Min, Srinivas, Vivek, Shmulevich, Ilya, Baliga, Nitin S.
Publicado 2020

Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis

por Peterson, Eliza J.R., Abidi, Abrar A., Arrieta-Ortiz, Mario L., Aguilar, Boris, Yurkovich, James T., Kaur, Amardeep, Pan, Min, Srinivas, Vivek, Shmulevich, Ilya, Baliga, Nitin S.
Publicado 2021

Antibody-recruiting protein-catalyzed capture agents to combat antibiotic-resistant bacteria

por Idso, Matthew N., Akhade, Ajay Suresh, Arrieta-Ortiz, Mario L., Lai, Bert T., Srinivas, Vivek, Hopkins, James P., Gomes, Ana Oliveira, Subramanian, Naeha, Baliga, Nitin, Heath, James R.
Publicado 2020

Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli

por Arrieta-Ortiz, Mario L., Pan, Min, Kaur, Amardeep, Pepper-Tunick, Evan, Srinivas, Vivek, Dash, Ananya, Immanuel, Selva Rupa Christinal, Brooks, Aaron N., Shepherd, Tyson R., Baliga, Nitin S.
Publicado 2022

The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility

por Montenegro Benavides, Nathaly Andrea, Alvarez B., Alejandro, Arrieta-Ortiz, Mario L., Rodriguez-R, Luis Miguel, Botero, David, Tabima, Javier Felipe, Castiblanco, Luisa, Trujillo, Cesar, Restrepo, Silvia, Bernal, Adriana
Publicado 2021

Path‐seq identifies an essential mycolate remodeling program for mycobacterial host adaptation

por Peterson, Eliza JR, Bailo, Rebeca, Rothchild, Alissa C, Arrieta‐Ortiz, Mario L, Kaur, Amardeep, Pan, Min, Mai, Dat, Abidi, Abrar A, Cooper, Charlotte, Aderem, Alan, Bhatt, Apoorva, Baliga, Nitin S
Publicado 2019

MtrA modulates Mycobacterium tuberculosis cell division in host microenvironments to mediate intrinsic resistance and drug tolerance

por Peterson, Eliza J.R., Brooks, Aaron N., Reiss, David J., Kaur, Amardeep, Do, Julie, Pan, Min, Wu, Wei-Ju, Morrison, Robert, Srinivas, Vivek, Carter, Warren, Arrieta-Ortiz, Mario L., Ruiz, Rene A., Bhatt, Apoorva, Baliga, Nitin S.
Publicado 2023

Genetic manipulation of candidate phyla radiation bacteria provides functional insights into microbial dark matter

por Wang, Yaxi, Gallagher, Larry A., Andrade, Pia A., Liu, Andi, Humphreys, Ian R., Turkarslan, Serdar, Cutler, Kevin J., Arrieta-Ortiz, Mario L., Li, Yaqiao, Radey, Matthew C., McLean, Jeffrey S., Cong, Qian, Baker, David, Baliga, Nitin S., Peterson, S. Brook, Mougous, Joseph D.
Publicado 2023

Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle

por Wang, Yaxi, Gallagher, Larry A., Andrade, Pia A., Liu, Andi, Humphreys, Ian R., Turkarslan, Serdar, Cutler, Kevin J., Arrieta-Ortiz, Mario L., Li, Yaqiao, Radey, Matthew C., McLean, Jeffrey S., Cong, Qian, Baker, David, Baliga, Nitin S., Peterson, S. Brook, Mougous, Joseph D.
Publicado 2023

An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network

por Arrieta‐Ortiz, Mario L, Hafemeister, Christoph, Bate, Ashley Rose, Chu, Timothy, Greenfield, Alex, Shuster, Bentley, Barry, Samantha N, Gallitto, Matthew, Liu, Brian, Kacmarczyk, Thadeous, Santoriello, Francis, Chen, Jie, Rodrigues, Christopher DA, Sato, Tsutomu, Rudner, David Z, Driks, Adam, Bonneau, Richard, Eichenberger, Patrick
Publicado 2015

Mathematical models to study the biology of pathogens and the infectious diseases they cause

por Xavier, Joao B., Monk, Jonathan M., Poudel, Saugat, Norsigian, Charles J., Sastry, Anand V., Liao, Chen, Bento, Jose, Suchard, Marc A., Arrieta-Ortiz, Mario L., Peterson, Eliza J.R., Baliga, Nitin S., Stoeger, Thomas, Ruffin, Felicia, Richardson, Reese A.K., Gao, Catherine A., Horvath, Thomas D., Haag, Anthony M., Wu, Qinglong, Savidge, Tor, Yeaman, Michael R.
Publicado 2022

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

por Darrasse, Armelle, Carrère, Sébastien, Barbe, Valérie, Boureau, Tristan, Arrieta-Ortiz, Mario L, Bonneau, Sophie, Briand, Martial, Brin, Chrystelle, Cociancich, Stéphane, Durand, Karine, Fouteau, Stéphanie, Gagnevin, Lionel, Guérin, Fabien, Guy, Endrick, Indiana, Arnaud, Koebnik, Ralf, Lauber, Emmanuelle, Munoz, Alejandra, Noël, Laurent D, Pieretti, Isabelle, Poussier, Stéphane, Pruvost, Olivier, Robène-Soustrade, Isabelle, Rott, Philippe, Royer, Monique, Serres-Giardi, Laurana, Szurek, Boris, van Sluys, Marie-Anne, Verdier, Valérie, Vernière, Christian, Arlat, Matthieu, Manceau, Charles, Jacques, Marie-Agnès
Publicado 2013

Genomic Survey of Pathogenicity Determinants and VNTR Markers in the Cassava Bacterial Pathogen Xanthomonas axonopodis pv. Manihotis Strain CIO151

por Arrieta-Ortiz, Mario L., Rodríguez-R, Luis M., Pérez-Quintero, Álvaro L., Poulin, Lucie, Díaz, Ana C., Arias Rojas, Nathalia, Trujillo, Cesar, Restrepo Benavides, Mariana, Bart, Rebecca, Boch, Jens, Boureau, Tristan, Darrasse, Armelle, David, Perrine, Dugé de Bernonville, Thomas, Fontanilla, Paula, Gagnevin, Lionel, Guérin, Fabien, Jacques, Marie-Agnès, Lauber, Emmanuelle, Lefeuvre, Pierre, Medina, Cesar, Medina, Edgar, Montenegro, Nathaly, Muñoz Bodnar, Alejandra, Noël, Laurent D., Ortiz Quiñones, Juan F., Osorio, Daniela, Pardo, Carolina, Patil, Prabhu B., Poussier, Stéphane, Pruvost, Olivier, Robène-Soustrade, Isabelle, Ryan, Robert P., Tabima, Javier, Urrego Morales, Oscar G., Vernière, Christian, Carrere, Sébastien, Verdier, Valérie, Szurek, Boris, Restrepo, Silvia, López, Camilo, Koebnik, Ralf, Bernal, Adriana
Publicado 2013