diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data

por Lareau, Caleb A, Aryee, Martin J
Publicado 2018

A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression

por Guintivano, Jerry, Aryee, Martin J., Kaminsky, Zachary A.
Publicado 2013

Identification of direction in gene networks from expression and methylation

por Simcha, David M, Younes, Laurent, Aryee, Martin J, Geman, Donald
Publicado 2013

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

por Ziller, Michael J., Hansen, Kasper D., Meissner, Alexander, Aryee, Martin J.
Publicado 2014

Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model

por Townes, F. William, Hicks, Stephanie C., Aryee, Martin J., Irizarry, Rafael A.
Publicado 2019

Author Correction: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model

por Townes, F. William, Hicks, Stephanie C., Aryee, Martin J., Irizarry, Rafael A.
Publicado 2020

An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation)

por Aryee, Martin J, Gutiérrez-Pabello, José A, Kramnik, Igor, Maiti, Tapabrata, Quackenbush, John
Publicado 2009

Estimating Diarrhea Mortality among Young Children in Low and Middle Income Countries

por Fischer Walker, Christa L., Aryee, Martin J., Boschi-Pinto, Cynthia, Black, Robert E.
Publicado 2012

Diarrhea incidence in low- and middle-income countries in 1990 and 2010: a systematic review

por Fischer Walker, Christa L, Perin, Jamie, Aryee, Martin J, Boschi-Pinto, Cynthia, Black, Robert E
Publicado 2012

A (fire)cloud-based DNA methylation data preprocessing and quality control platform

por Kangeyan, Divy, Dunford, Andrew, Iyer, Sowmya, Stewart, Chip, Hanna, Megan, Getz, Gad, Aryee, Martin J.
Publicado 2019

CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR-Cas9 nuclease off-targets

por Tsai, Shengdar Q., Nguyen, Nhu T., Malagon-Lopez, Jose, Topkar, Ved V., Aryee, Martin J., Joung, J. Keith
Publicado 2017

CRISPR DNA base editors with reduced RNA off-target and self-editing activities

por Grünewald, Julian, Zhou, Ronghao, Iyer, Sowmya, Lareau, Caleb A., Garcia, Sara P., Aryee, Martin J., Joung, J. Keith
Publicado 2019

Global Causes of Diarrheal Disease Mortality in Children <5 Years of Age: A Systematic Review

por Lanata, Claudio F., Fischer-Walker, Christa L., Olascoaga, Ana C., Torres, Carla X., Aryee, Martin J., Black, Robert E.
Publicado 2013

The early pregnancy placenta foreshadows DNA methylation alterations of solid tumors

por Nordor, Akpéli V., Nehar-Belaid, Djamel, Richon, Sophie, Klatzmann, David, Bellet, Dominique, Dangles-Marie, Virginie, Fournier, Thierry, Aryee, Martin J.
Publicado 2017

Reversible switching between epigenetic states in honeybee behavioral subcastes

por Herb, Brian R., Wolschin, Florian, Hansen, Kasper D., Aryee, Martin J., Langmead, Ben, Irizarry, Rafael, Amdam, Gro V., Feinberg, Andrew P.
Publicado 2012

Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing

por Tsai, Shengdar Q., Wyvekens, Nicolas, Khayter, Cyd, Foden, Jennifer A., Thapar, Vishal, Reyon, Deepak, Goodwin, Mathew J., Aryee, Martin J., Joung, J. Keith
Publicado 2014

Augmenting and directing long-range CRISPR-mediated activation in human cells

por Tak, Y. Esther, Horng, Joy E., Perry, Nicholas T., Schultz, Hayley T., Iyer, Sowmya, Yao, Qiuming, Zou, Luli S., Aryee, Martin J., Pinello, Luca, Joung, J. Keith
Publicado 2021

Polycomb-lamina antagonism partitions heterochromatin at the nuclear periphery

por Siegenfeld, Allison P., Roseman, Shelby A., Roh, Heejin, Lue, Nicholas Z., Wagen, Corin C., Zhou, Eric, Johnstone, Sarah E., Aryee, Martin J., Liau, Brian B.
Publicado 2022

Genome-wide specificities of CRISPR-Cas Cpf1 nucleases in human cells

por Kleinstiver, Benjamin P., Tsai, Shengdar Q., Prew, Michelle S., Nguyen, Nhu T., Welch, Moira M., Lopez, Jose M., McCaw, Zachary R., Aryee, Martin J., Joung, J. Keith
Publicado 2016

A dual-deaminase CRISPR base editor enables concurrent adenine and cytosine editing

por Grünewald, Julian, Zhou, Ronghao, Lareau, Caleb A., Garcia, Sara P., Iyer, Sowmya, Miller, Bret R., Langner, Lukas M., Hsu, Jonathan Y., Aryee, Martin J., Joung, J. Keith
Publicado 2020