FiNGS: high quality somatic mutations using filters for next generation sequencing

por Wardell, Christopher Paul, Ashby, Cody, Bauer, Michael Anton
Publicado 2021

Epigenetic Deregulation of Telomere-Related Genes in Newly Diagnosed Multiple Myeloma Patients

por Roy Choudhury, Samrat, Ashby, Cody, Zhan, Fenghuang, van Rhee, Frits
Publicado 2021

New enumeration algorithm for protein structure comparison and classification

por Ashby, Cody, Johnson, Daniel, Walker, Karl, Kanj, Iyad A, Xia, Ge, Huang, Xiuzhen
Publicado 2013

eMBI: Boosting Gene Expression-based Clustering for Cancer Subtypes

por Chang, Zheng, Wang, Zhenjia, Ashby, Cody, Zhou, Chuan, Li, Guojun, Zhang, Shuzhong, Huang, Xiuzhen
Publicado 2014

Bridger: a new framework for de novo transcriptome assembly using RNA-seq data

por Chang, Zheng, Li, Guojun, Liu, Juntao, Zhang, Yu, Ashby, Cody, Liu, Deli, Cramer, Carole L, Huang, Xiuzhen
Publicado 2015

SPARCoC: A New Framework for Molecular Pattern Discovery and Cancer Gene Identification

por Ma, Shiqian, Johnson, Daniel, Ashby, Cody, Xiong, Donghai, Cramer, Carole L., Moore, Jason H., Zhang, Shuzhong, Huang, Xiuzhen
Publicado 2015

Expression of integrin β-7 is epigenetically enhanced in multiple myeloma subgroups with high-risk cytogenetics

por Roy Choudhury, Samrat, Byrum, Stephanie D., Alkam, Duah, Ashby, Cody, Zhan, Fenghuang, Tackett, Alan J., Van Rhee, Frits
Publicado 2023

DNAp: A Pipeline for DNA-seq Data Analysis

por Causey, Jason L., Ashby, Cody, Walker, Karl, Wang, Zhiping Paul, Yang, Mary, Guan, Yuanfang, Moore, Jason H., Huang, Xiuzhen
Publicado 2018

Enhancing cancer clonality analysis with integrative genomics

por Peterson, Erich A, Bauer, Michael A, Chavan, Shweta S, Ashby, Cody, Weinhold, Niels, Heuck, Christoph J, Morgan, Gareth J, Johann, Donald J
Publicado 2015

TarPan: an easily adaptable targeted sequencing panel viewer for research and clinical use

por Ashby, Cody, Rutherford, Michael, Bauer, Michael A., Peterson, Erich A., Wang, Yan, Boyle, Eileen M., Wardell, Christopher P., Walker, Brian A.
Publicado 2020

Differential RNA splicing as a potentially important driver mechanism in multiple myeloma

por Bauer, Michael A., Ashby, Cody, Wardell, Christopher, Boyle, Eileen M., Ortiz, Maria, Flynt, Erin, Thakurta, Anjan, Morgan, Gareth, Walker, Brian A.
Publicado 2020

3195 Genomic Analysis of Primary Plasma Cell Leukemia reveals Complex Cytogenetic Alterations and High Risk Mutational Patterns

por Schinke, Carolina, Boyle, Eileen, Ashby, Cody, Wang, Yan, Christopher Wardell, Davies, Thanendrarajan, Sharmilan, Zangari, maurizio, van Rhee, Frits, Morgan, Gareth, Walker, Brian
Publicado 2019

Loss of heterozygosity as a marker of homologous repair deficiency in multiple myeloma: a role for PARP inhibition?

por Pawlyn, Charlotte, Loehr, Andrea, Ashby, Cody, Tytarenko, Ruslana, Deshpande, Shayu, Sun, James, Fedorchak, Kyle, Mughal, Tariq, Davies, Faith E., Walker, Brian A., Morgan, Gareth J.
Publicado 2018

Notch3 signaling between myeloma cells and osteocytes in the tumor niche promotes tumor growth and bone destruction

por Sabol, Hayley M., Amorim, Tânia, Ashby, Cody, Halladay, David, Anderson, Judith, Cregor, Meloney, Sweet, Megan, Nookaew, Intawat, Kurihara, Noriyoshi, Roodman, G. David, Bellido, Teresita, Delgado-Calle, Jesus
Publicado 2022

The functional epigenetic landscape of aberrant gene expression in molecular subgroups of newly diagnosed multiple myeloma

por Choudhury, Samrat Roy, Ashby, Cody, Tytarenko, Ruslana, Bauer, Michael, Wang, Yan, Deshpande, Shayu, Den, Judith, Schinke, Carolina, Zangari, Maurizio, Thanendrarajan, Sharmilan, Davies, Faith E., van Rhee, Frits, Morgan, Gareth J., Walker, Brian A.
Publicado 2020

Poor overall survival in hyperhaploid multiple myeloma is defined by double-hit bi-allelic inactivation of TP53

por Ashby, Cody, Tytarenko, Ruslana G., Wang, Yan, Weinhold, Niels, Johnson, Sarah K., Bauer, Michael, Wardell, Christopher P., Schinke, Carolina, Thanendrarajan, Sharmilan, Zangari, Mauricio, van Rhee, Frits, Davies, Faith E., Sawyer, Jeffrey R., Morgan, Gareth J., Walker, Brian A.
Publicado 2019

Structural variants shape the genomic landscape and clinical outcome of multiple myeloma

por Ashby, Cody, Boyle, Eileen M., Bauer, Michael A., Mikulasova, Aneta, Wardell, Christopher P., Williams, Louis, Siegel, Ariel, Blaney, Patrick, Braunstein, Marc, Kaminetsky, David, Keats, Jonathan, Maura, Francesco, Landgren, Ola, Walker, Brian A., Davies, Faith E., Morgan, Gareth J.
Publicado 2022

The spatio-temporal evolution of multiple myeloma from baseline to relapse-refractory states

por Rasche, Leo, Schinke, Carolina, Maura, Francesco, Bauer, Michael A., Ashby, Cody, Deshpande, Shayu, Poos, Alexandra M., Zangari, Maurizio, Thanendrarajan, Sharmilan, Davies, Faith E., Walker, Brian A., Barlogie, Bart, Landgren, Ola, Morgan, Gareth J., van Rhee, Frits, Weinhold, Niels
Publicado 2022

Genomic analysis of primary plasma cell leukemia reveals complex structural alterations and high-risk mutational patterns

por Schinke, Carolina, Boyle, Eileen M., Ashby, Cody, Wang, Yan, Lyzogubov, Valeriy, Wardell, Christopher, Qu, Pingping, Hoering, Antje, Deshpande, Shayu, Ryan, Katie, Thanendrarajan, Sharmilan, Mohan, Meera, Yarlagadda, Naveen, Khan, Maliha, Choudhury, Samrat Roy, Zangari, Maurizio, van Rhee, Frits, Davies, Faith, Barlogie, Bart, Morgan, Gareth, Walker, Brian A.
Publicado 2020

CST6 suppresses osteolytic bone disease in multiple myeloma by blocking osteoclast differentiation

por Gai, Dongzheng, Chen, Jin-Ran, Stewart, James P., Nookaew, Intawat, Habelhah, Hasem, Ashby, Cody, Sun, Fumou, Cheng, Yan, Li, Can, Xu, Hongwei, Peng, Bailu, Garg, Tarun K., Schinke, Carolina, Thanendrarajan, Sharmilan, Zangari, Maurizio, Chen, Fangping, Barlogie, Bart, van Rhee, Frits, Tricot, Guido, Shaughnessy, John D., Zhan, Fenghuang
Publicado 2022