Neisseria meningitidis carriage rate, antibiotic susceptibility profile, and associated factors among prisoners at Jimma zonal correction facility in Jimma Town, Southwestern Ethio...

por Assefa, Samuel, Abdissa, Alemseged, Alemu, Yared, Girma, Lencho, Sahlu, Degemu
Publicado 2022

ABACAS: algorithm-based automatic contiguation of assembled sequences

por Assefa, Samuel, Keane, Thomas M., Otto, Thomas D., Newbold, Chris, Berriman, Matthew
Publicado 2009

Culture adaptation of malaria parasites selects for convergent loss-of-function mutants

por Claessens, Antoine, Affara, Muna, Assefa, Samuel A., Kwiatkowski, Dominic P., Conway, David J.
Publicado 2017

estMOI: estimating multiplicity of infection using parasite deep sequencing data

por Assefa, Samuel A., Preston, Mark D., Campino, Susana, Ocholla, Harold, Sutherland, Colin J., Clark, Taane G.
Publicado 2014

Identification of α-Glucosidase Inhibitors from Leaf Extract of Pepper (Capsicum spp.) through Metabolomic Analysis

por Assefa, Samuel Tilahun, Yang, Eun-Young, Asamenew, Gelila, Kim, Heon-Woong, Cho, Myeong-Cheoul, Lee, Jundae
Publicado 2021

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data

por Sepúlveda, Nuno, Campino, Susana G, Assefa, Samuel A, Sutherland, Colin J, Pain5, Arnab, Clark, Taane G
Publicado 2013

Alpha Glucosidase Inhibitory Activities of Plants with Focus on Common Vegetables

por Assefa, Samuel Tilahun, Yang, Eun-Young, Chae, Soo-Young, Song, Mihye, Lee, Jundae, Cho, Myeong-Cheoul, Jang, Seonghoe
Publicado 2019

Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections

por Murray, Lee, Mobegi, Victor A., Duffy, Craig W., Assefa, Samuel A., Kwiatkowski, Dominic P., Laman, Eugene, Loua, Kovana M., Conway, David J.
Publicado 2016

Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species

por Divis, Paul C. S., Singh, Balbir, Anderios, Fread, Hisam, Shamilah, Matusop, Asmad, Kocken, Clemens H., Assefa, Samuel A., Duffy, Craig W., Conway, David J.
Publicado 2015

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data

por Preston, Mark D., Manske, Magnus, Horner, Neil, Assefa, Samuel, Campino, Susana, Auburn, Sarah, Zongo, Issaka, Ouedraogo, Jean-Bosco, Nosten, Francois, Anderson, Tim, Clark, Taane G.
Publicado 2012

Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution

por Duffy, Craig W., Ba, Hampate, Assefa, Samuel, Ahouidi, Ambroise D., Deh, Yacine B., Tandia, Abderahmane, Kirsebom, Freja C. M., Kwiatkowski, Dominic P., Conway, David J.
Publicado 2017

Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity

por Duffy, Craig W., Assefa, Samuel A., Abugri, James, Amoako, Nicholas, Owusu-Agyei, Seth, Anyorigiya, Thomas, MacInnis, Bronwyn, Kwiatkowski, Dominic P., Conway, David J., Awandare, Gordon A.
Publicado 2015

Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines

por Campino, Susana, Benavente, Ernest Diez, Assefa, Samuel, Thompson, Eloise, Drought, Laura G., Taylor, Catherine J., Gorvett, Zaria, Carret, Celine K., Flueck, Christian, Ivens, Al C., Kwiatkowski, Dominic P., Alano, Pietro, Baker, David A., Clark, Taane G.
Publicado 2016

A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

por Perkins, Timothy T., Kingsley, Robert A., Fookes, Maria C., Gardner, Paul P., James, Keith D., Yu, Lu, Assefa, Samuel A., He, Miao, Croucher, Nicholas J., Pickard, Derek J., Maskell, Duncan J., Parkhill, Julian, Choudhary, Jyoti, Thomson, Nicholas R., Dougan, Gordon
Publicado 2009

Drug-Resistant Genotypes and Multi-Clonality in Plasmodium falciparum Analysed by Direct Genome Sequencing from Peripheral Blood of Malaria Patients

por Robinson, Timothy, Campino, Susana G., Auburn, Sarah, Assefa, Samuel A., Polley, Spencer D., Manske, Magnus, MacInnis, Bronwyn, Rockett, Kirk A., Maslen, Gareth L., Sanders, Mandy, Quail, Michael A., Chiodini, Peter L., Kwiatkowski, Dominic P., Clark, Taane G., Sutherland, Colin J.
Publicado 2011

Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya

por Borrmann, Steffen, Straimer, Judith, Mwai, Leah, Abdi, Abdirahman, Rippert, Anja, Okombo, John, Muriithi, Steven, Sasi, Philip, Kortok, Moses Mosobo, Lowe, Brett, Campino, Susana, Assefa, Samuel, Auburn, Sarah, Manske, Magnus, Maslen, Gareth, Peshu, Norbert, Kwiatkowski, Dominic P., Marsh, Kevin, Nzila, Alexis, Clark, Taane G.
Publicado 2013

Elucidating Emergence and Transmission of Multidrug-Resistant Tuberculosis in Treatment Experienced Patients by Whole Genome Sequencing

por Clark, Taane G., Mallard, Kim, Coll, Francesc, Preston, Mark, Assefa, Samuel, Harris, David, Ogwang, Sam, Mumbowa, Francis, Kirenga, Bruce, O’Sullivan, Denise M., Okwera, Alphonse, Eisenach, Kathleen D., Joloba, Moses, Bentley, Stephen D., Ellner, Jerrold J., Parkhill, Julian, Jones-López, Edward C., McNerney, Ruth
Publicado 2013

PlasmoView: A Web-based Resource to Visualise Global Plasmodium falciparum Genomic Variation

por Preston, Mark D., Assefa, Samuel A., Ocholla, Harold, Sutherland, Colin J., Borrmann, Steffen, Nzila, Alexis, Michon, Pascal, Hien, Tran Tinh, Bousema, Teun, Drakeley, Christopher J., Zongo, Issaka, Ouédraogo, Jean-Bosco, Djimde, Abdoulaye A., Doumbo, Ogobara K., Nosten, Francois, Fairhurst, Rick M., Conway, David J., Roper, Cally, Clark, Taane G.
Publicado 2014

Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus

por Kikuchi, Taisei, Cotton, James A., Dalzell, Jonathan J., Hasegawa, Koichi, Kanzaki, Natsumi, McVeigh, Paul, Takanashi, Takuma, Tsai, Isheng J., Assefa, Samuel A., Cock, Peter J. A., Otto, Thomas Dan, Hunt, Martin, Reid, Adam J., Sanchez-Flores, Alejandro, Tsuchihara, Kazuko, Yokoi, Toshiro, Larsson, Mattias C., Miwa, Johji, Maule, Aaron G., Sahashi, Norio, Jones, John T., Berriman, Matthew
Publicado 2011

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains

por Preston, Mark D., Campino, Susana, Assefa, Samuel A., Echeverry, Diego F., Ocholla, Harold, Amambua-Ngwa, Alfred, Stewart, Lindsay B., Conway, David J., Borrmann, Steffen, Michon, Pascal, Zongo, Issaka, Ouédraogo, Jean-Bosco, Djimde, Abdoulaye A., Doumbo, Ogobara K., Nosten, Francois, Pain, Arnab, Bousema, Teun, Drakeley, Chris J., Fairhurst, Rick M., Sutherland, Colin J., Roper, Cally, Clark, Taane G.
Publicado 2014