Perturbation-Response Scanning Reveals Ligand Entry-Exit Mechanisms of Ferric Binding Protein

por Atilgan, Canan, Atilgan, Ali Rana
Publicado 2009

Assortative Mixing in Close-Packed Spatial Networks

por Turgut, Deniz, Atilgan, Ali Rana, Atilgan, Canan
Publicado 2010

DHFR Mutants Modulate Their Synchronized Dynamics with the Substrate by Shifting Hydrogen Bond Occupancies

por Cetin, Ebru, Atilgan, Ali Rana, Atilgan, Canan
Publicado 2022

Designing Molecular Dynamics Simulations to Shift Populations of the Conformational States of Calmodulin

por Aykut, Ayse Ozlem, Atilgan, Ali Rana, Atilgan, Canan
Publicado 2013

A Coarse-Grained Methodology Identifies Intrinsic Mechanisms That Dissociate Interacting Protein Pairs

por Abdizadeh, Haleh, Jalalypour, Farzaneh, Atilgan, Ali Rana, Atilgan, Canan
Publicado 2020

MODE-TASK: large-scale protein motion tools

por Ross, Caroline, Nizami, Bilal, Glenister, Michael, Sheik Amamuddy, Olivier, Atilgan, Ali Rana, Atilgan, Canan, Tastan Bishop, Özlem
Publicado 2018

Kinetic Barrier to Enzyme Inhibition Is Manipulated by Dynamical Local Interactions in E. coli DHFR

por Cetin, Ebru, Guclu, Tandac F., Kantarcioglu, Isik, Gaszek, Ilona K., Toprak, Erdal, Atilgan, Ali Rana, Dedeoglu, Burcu, Atilgan, Canan
Publicado 2023

MD-TASK: a software suite for analyzing molecular dynamics trajectories

por Brown, David K, Penkler, David L, Sheik Amamuddy, Olivier, Ross, Caroline, Atilgan, Ali Rana, Atilgan, Canan, Tastan Bishop, Özlem
Publicado 2017

High-Order Epistasis in Catalytic Power of Dihydrofolate Reductase Gives Rise to a Rugged Fitness Landscape in the Presence of Trimethoprim Selection

por Tamer, Yusuf Talha, Gaszek, Ilona K, Abdizadeh, Haleh, Batur, Tugce Altinusak, Reynolds, Kimberly A, Atilgan, Ali Rana, Atilgan, Canan, Toprak, Erdal
Publicado 2019

A trimethoprim derivative impedes antibiotic resistance evolution

por Manna, Madhu Sudan, Tamer, Yusuf Talha, Gaszek, Ilona, Poulides, Nicole, Ahmed, Ayesha, Wang, Xiaoyu, Toprak, Furkan C. R., Woodard, DaNae R., Koh, Andrew Y., Williams, Noelle S., Borek, Dominika, Atilgan, Ali Rana, Hulleman, John D., Atilgan, Canan, Tambar, Uttam, Toprak, Erdal
Publicado 2021